Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20015 476 / 1e-165 Eukaryotic aspartyl protease family protein (.1) AT3G18490 300 / 4e-96 Eukaryotic aspartyl protease family protein (.1) AT1G25510 293 / 9e-94 Eukaryotic aspartyl protease family protein (.1) AT1G01300 278 / 5e-88 Eukaryotic aspartyl protease family protein (.1) AT3G61820 268 / 3e-84 Eukaryotic aspartyl protease family protein (.1) AT5G10770 201 / 1e-58 Eukaryotic aspartyl protease family protein (.1) AT5G10760 181 / 2e-51 Eukaryotic aspartyl protease family protein (.1) AT2G03200 163 / 1e-44 Eukaryotic aspartyl protease family protein (.1) AT1G79720 153 / 7e-41 Eukaryotic aspartyl protease family protein (.1) AT5G33340 150 / 3e-40 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017362 [exp] 724 / 0 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 273 / 4e-86 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 256 / 3e-79 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 212 / 1e-63 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 170 / 3e-47 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 172 / 1e-46 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 167 / 1e-45 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10024903 [exp] 164 / 6e-45 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 165 / 8e-45 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106300 [exp] 473 / 7e-164 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 469 / 5e-162 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 318 / 1e-103 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 315 / 3e-102 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 268 / 3e-84 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 267 / 8e-84 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 183 / 6e-52 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 176 / 3e-49 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 173 / 2e-48 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 173 / 2e-48 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10010157 pacid=23154230 polypeptide=Lus10010157 locus=Lus10010157.g ID=Lus10010157.BGIv1.0 annot-version=v1.0 ATGCCGCCTTTCCACGCTTCCCCACCAATACCAACACTCCCACTCTTCCTAATCCTACTCTCCCCCCTCCTCCTAGCCACCGCCGCCAACAGTATCCACT TCCCCGACTTCCAACACTTCAACCTCCGACAGCCGCCGCCTGAATCCAACCTCCAACCACTAAACGACGAAACCAATACCAATTCTGATGGCAGGAAGCT TCGGCTCAACCTCCTCCACCGAGACCAATTAATTCCACACCACCACAACAGAACCTTCCACAACCTTCTCCACTCCCGCATCCGCCGCGACATCCACCGT GTCGCCGCAATTCTCCGCCGTCTCAATTCCACAACCAATCAGGAACTATCATCGTACAATCTTGATACCGATGTCGTTGACCGTCCTCTCGAATTCGGCA CCGAGGTGGTATCCGGGATGGAGCAAGGCAGCGGGGAGTATTTCGTCCGTATCGGAGTGGGGAGTCCGCCAACGAGCCAGTACATGGTGGTGGATTCCGG CAGTGATATCGTGTGGGTCCAGTGTAAGCCCTGTTCCCAATGCTATAGCCAGTCGGATCCTCTATTCGACCCGGAATTTTCAACTTCATTCTCCTCTGTT TCCTGCTCTTCCACCGCTTGCGACCGGCTTGCTGCTGGCAACACCGCCTCCTCCTGCGGATCCGGCCGCTGCCGCTACGAGGTCTCCTACGGGGACGGCT CCTACACAAAAGGGACCTTAGCACTCGAGACTATTACGTTCCATGACAGCGCCGTAGTCCACGACGTTGCCATCGGATGCGGCCACAACAACCGTGGGAT GTTCGTCGGAGCCGCCGGTCTCCTCGGATTGGGAGGCGGGTCGATGTCGTTCGTCGGCCAACTGGGCGGCCAAGCCGGCGGAGCATTCACCTATTGCCTA GTCAGCAGGGGATCCTCGTCCGGGTCCGGATGGCTCGAATTCGGACGGGGATCCGTCCCCGTCGGCGCTGCCTGGATCCCTCTCATCCGAAACCCGAGAG CTTCGAGCTTCTACTACGTCGGACTCTCGGGTTTGGGCGTCGGAGGAGTCCGCGTCCCCATCCCCGAGGACGCCTTCCGGCTAACAGAGCTGGGAGACTG CGGGGTGGTGATGGACACAGGCACCGCCGTGACCAGGCTGCCCGGGGATGCCTACGTGGCGTTCAGAGACGCCTTCGTGGCACAGACGCGGGACCTACCG AGGTCAGCTTCCGGAGGGGTGTCAATATTCGACACGTGTTACGATCTGAACGGGTTCGTCACCGTGAGGGTTCCCACGGTGTCGTTCTACTTCTCAGAAG GACCCGTGCTGACCCTCCCGGCGAAGAACTTCTTGATTCCGGTGGACGAAAGCGGAACTTTCTGCCTGGCGTTTGCGGCGTCGGCGTCGAGGCTTTCCAT CATCGGTAACGTACAGCAGCAAGGAATCCAGATATCTGTGGACGGTGCCAATGGATTCGTTGGGTTCGGTCCCAATGTCTGCTGA
AA sequence Show only first row Show all	>Lus10010157 pacid=23154230 polypeptide=Lus10010157 locus=Lus10010157.g ID=Lus10010157.BGIv1.0 annot-version=v1.0 MPPFHASPPIPTLPLFLILLSPLLLATAANSIHFPDFQHFNLRQPPPESNLQPLNDETNTNSDGRKLRLNLLHRDQLIPHHHNRTFHNLLHSRIRRDIHR VAAILRRLNSTTNQELSSYNLDTDVVDRPLEFGTEVVSGMEQGSGEYFVRIGVGSPPTSQYMVVDSGSDIVWVQCKPCSQCYSQSDPLFDPEFSTSFSSV SCSSTACDRLAAGNTASSCGSGRCRYEVSYGDGSYTKGTLALETITFHDSAVVHDVAIGCGHNNRGMFVGAAGLLGLGGGSMSFVGQLGGQAGGAFTYCL VSRGSSSGSGWLEFGRGSVPVGAAWIPLIRNPRASSFYYVGLSGLGVGGVRVPIPEDAFRLTELGDCGVVMDTGTAVTRLPGDAYVAFRDAFVAQTRDLP RSASGGVSIFDTCYDLNGFVTVRVPTVSFYFSEGPVLTLPAKNFLIPVDESGTFCLAFAASASRLSIIGNVQQQGIQISVDGANGFVGFGPNVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	0	1
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	1.0	0.9685
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	6.5	0.9191
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	9.2	0.9190
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	11.9	0.9263
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	15.0	0.9178
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	15.0	0.9133
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	15.9	0.8904
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	16.4	0.9111
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	18.0	0.8970
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	18.4	0.8983

Compare expression of checked genes

Lus10010157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.