Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08540 371 / 2e-128 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017363 [exp] 525 / 0 AT5G08540 367 / 1e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254800 [exp] 392 / 2e-136 AT5G08540 382 / 1e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010158 pacid=23154194 polypeptide=Lus10010158 locus=Lus10010158.g ID=Lus10010158.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCCCTACAGCAGCTTCATCAACAGCTGCATCATCTCAGCTTCTTCAGATTGCGAAACCGAAGCCATGCTTCCCTCCTCCCGTCCTCTCAT TTCCCATTTGTCCTTCACGGAGGAGGATATCCGTGGCCGTGGCAGCGAAAGCGAGCAAAAGCAACGATGCGAAGGAAAGCAAGAAAGCAGAAGAGGAAGT GATTGAAGTGGAGGAGGATTTGCCGTGGATTCAGGAGAAGGCGTTGGACATGGTCGAGTTCACTGGATCCGTCACTCAAGCTATTCCTGGTCCCAGAGTT GGTAAAAGCTCTCTTCCTTGGATTCTCGCGCTCCCGTTGGCTTACGCCGGCGTTACTTTCGTTATTGCCTTTGTCAAGACCGTCAGGAAGTTGTCTTCTC CGAAAGCCAAGCGAAAGAGACTGGTTGGTAGAAACGCTGAACTGTGTAGATCAGTTGACCAGTTGCTTCTGAGCGGGGGAGATGCATTGGAACACCACTC AGCTTTGGAAGCGCTAATGAAAAAGACAGGTTTCACTATGGAGGACGTTTTGCGGAAGTATATTCGCTATGCACTGAATGAGAAGCCTTTCAATCCGGAA CTGGTTTCCAGCTTGATCCATCTCAGGAGAGCTTCACAGTTGAGTGACGTCCAGATGGCTGAAATTGTGAACCAGATTGCTCGGCTGATTGTGCGAGACA AAGGCCCGGTTGTCATGGAGATGTCAGGCTATACAGAACAGGGTTTTAAGAGAAAACTTGCTGTTCAGACTCTTTTCGGCAAGGTGTTTTATTTGTCTGA GTTACCAGAGTTTTGTTCAAGGGACAGCTCACTAGTGGTGAAAGAGATATTTGGCGTTACAGATGAAGATGCGAATCAGCTTCGGGTGCACACTGTATCC GAAGCCGGTGAGATGGATTCGCTAGAAAGGATGGTGGATGCTGATTACGATTCCGAGGAACATTCTTCAGATGAGGAATCGACATCACCCAACGATGATG ATGCTCCCATGCCATGA
AA sequence Show only first row Show all	>Lus10010158 pacid=23154194 polypeptide=Lus10010158 locus=Lus10010158.g ID=Lus10010158.BGIv1.0 annot-version=v1.0 MASFPTAASSTAASSQLLQIAKPKPCFPPPVLSFPICPSRRRISVAVAAKASKSNDAKESKKAEEEVIEVEEDLPWIQEKALDMVEFTGSVTQAIPGPRV GKSSLPWILALPLAYAGVTFVIAFVKTVRKLSSPKAKRKRLVGRNAELCRSVDQLLLSGGDALEHHSALEALMKKTGFTMEDVLRKYIRYALNEKPFNPE LVSSLIHLRRASQLSDVQMAEIVNQIARLIVRDKGPVVMEMSGYTEQGFKRKLAVQTLFGKVFYLSELPEFCSRDSSLVVKEIFGVTDEDANQLRVHTVS EAGEMDSLERMVDADYDSEEHSSDEESTSPNDDDAPMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08540			unknown protein		Lus10010158 [exp]	0	1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	3.9	0.8090
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	7.9	0.8472
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10030158 [exp]	13.0	0.8023
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	16.1	0.8383
AT2G40430			unknown protein		Lus10011462 [exp]	17.5	0.8400
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	33.2	0.8275
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	33.8	0.8342
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	35.6	0.7796
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	36.4	0.8271
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	37.7	0.8291

Compare expression of checked genes

Lus10010158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.