Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 896 / 0 Pyruvate kinase family protein (.1) AT5G63680 884 / 0 Pyruvate kinase family protein (.1) AT5G56350 788 / 0 Pyruvate kinase family protein (.1) AT4G26390 775 / 0 Pyruvate kinase family protein (.1) AT3G04050 717 / 0 Pyruvate kinase family protein (.1) AT3G55650 687 / 0 Pyruvate kinase family protein (.1) AT3G25960 684 / 0 Pyruvate kinase family protein (.1) AT3G55810 637 / 0 Pyruvate kinase family protein (.1) AT2G36580 388 / 4e-130 Pyruvate kinase family protein (.1) AT3G52990 387 / 2e-129 Pyruvate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017364 [exp] 1011 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 945 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 813 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 805 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 712 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 692 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 541 / 0 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10013450 [exp] 380 / 2e-131 AT5G08570 356 / 1e-122 Pyruvate kinase family protein (.1) Lus10035581 [exp] 378 / 3e-126 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254900 [exp] 914 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 912 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 791 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 788 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 753 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 744 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G027100 [exp] 379 / 1e-126 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.006G117400 [exp] 378 / 5e-126 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 372 / 1e-123 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 273 / 9e-85 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10010159 pacid=23154228 polypeptide=Lus10010159 locus=Lus10010159.g ID=Lus10010159.BGIv1.0 annot-version=v1.0 ATGGCCAATATCGACATTGCTGGCCTGCTGAACGACGATATGGACGGTCGGATTTCGAAGACGAAGATCGTCTGTACTTTAGGTCCAGCTTCTAGATCTG TAGCCATGATCGAGAAGCTTCTCAAGGCCGGGATGAACGTTGCTCGATTCAACTTCTCCCATGGCTCCCATGAGTACCACCAGGAGACGTTGGATAACCT CCGGATCGCCATGCACAATACTCTCACCCTCTGCGCTGTCATGCTCGACACCAAGGGACCTGAAATCCGAACAGGATTCCTAAAGGACGAGAAGCCAATC CAGCTGCAAGAAGGCCAAGAGATCACCATCTCTACTGACTACACCATCAAGGGAGACACAGAGACGATCTCCATGAGTTATAAGAAGCTGCCTATGGATG TGAAACCAGGAAACACAATCTTGTGTTCAGACGGCACCATCTCTCTCTCTGTTCTGTCGTGTGATCCCAAGGCTGGAACCGTGAGGTGCCGCTGCCAGAA CTCTGCAGTGCTGGGCGAGAGGAAGAATGTCAATCTTCCTGGTGTCGTAGTGGATCTCCCTACTCTCACTGAGAAGGACAAAGAAGACATCCTTCAGTGG GGTGTTCCCAACAGCATTGATATGATTGCTCTCTCCTTTGTCCGCAAAGGATCCGATCTTGTCAATGTCCGCAAGGTCCTTGGTCCTCATGCTAAGCATA TCAAGTTGATGTCTAAGGTCGAGAATCAGGAAGGTGTGATCAACTTCGACGAGATCCTCCGCGAGACAGACGCCTTCATGGTTGCCCGTGGCGACCTAGG AATGGAAATCCCAGTCGAAAAGATCTTCCTGGCACAAAAGATGATGATCTACAAATGCAACCTCGTCGGGAAGCCAGTTGTCACCGCAACCCAAATGCTC GAGTCCATGATCAAATCCCCTCGCCCAACTCGCGCGGAAGCCACCGACGTCGCCAATGCAGTCCTCGACGGCACAGACTGCGTCATGCTCAGCGGCGAGA GCGCAGCTGGACTCTACCCTGAACTCGCAGTGAAAACCATGCGCAGAATCTGCATAGAGGCAGAATCTTCACTGGACTACAAGACCATATTCAAGGAAAT GATCAGGTCGACGCCGCTTCCAATGAGTCCCTTGGAGAGTCTTGCTTCATCCGCCGTCGGGACGGCGAACAAGGCCAGAGCCAAGCTGATCATCGTCCTG ACACGTGGCGGCACCACGGCGACTCTTGTGGCTAAGCCGTCGGTTCCCATCCTGTCGGTGGTCGTGCCGGAGTTGACCACGGACTCGTTCGACTGGGGAT GCAGCGACGAGTCACCGGCGAGGCACAGTCTGATATACAGAGGGTTGATACCTCTGCTGGCGGAAGGTTCTTCCAGGGCTACTGATGCAGAGTCGACCAA GGAGATATTGGACGCTGCTCTGAAGTCGGCGACCAAGAAGAAGCTTTGTGACGCCGGAGATGCCGTAGTGGTGCTCCATAGGATCGGTGCGGCGTCTGTT ATCAAGATATGCGTTGCCTAA
AA sequence Show only first row Show all	>Lus10010159 pacid=23154228 polypeptide=Lus10010159 locus=Lus10010159.g ID=Lus10010159.BGIv1.0 annot-version=v1.0 MANIDIAGLLNDDMDGRISKTKIVCTLGPASRSVAMIEKLLKAGMNVARFNFSHGSHEYHQETLDNLRIAMHNTLTLCAVMLDTKGPEIRTGFLKDEKPI QLQEGQEITISTDYTIKGDTETISMSYKKLPMDVKPGNTILCSDGTISLSVLSCDPKAGTVRCRCQNSAVLGERKNVNLPGVVVDLPTLTEKDKEDILQW GVPNSIDMIALSFVRKGSDLVNVRKVLGPHAKHIKLMSKVENQEGVINFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGLYPELAVKTMRRICIEAESSLDYKTIFKEMIRSTPLPMSPLESLASSAVGTANKARAKLIIVL TRGGTTATLVAKPSVPILSVVVPELTTDSFDWGCSDESPARHSLIYRGLIPLLAEGSSRATDAESTKEILDAALKSATKKKLCDAGDAVVVLHRIGAASV IKICVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	0	1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	2.0	0.9624
AT2G20420			ATP citrate lyase (ACL) family...		Lus10003620 [exp]	4.2	0.9484
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	4.9	0.9533
					Lus10023559 [exp]	7.3	0.9468
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	7.9	0.9417
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	8.0	0.9399
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	8.2	0.8944
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	8.7	0.9480
AT5G08570			Pyruvate kinase family protein...		Lus10017364 [exp]	9.8	0.8850
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	10.0	0.9474

Compare expression of checked genes

Lus10010159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.