Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08380 581 / 0 ATAGAL1 alpha-galactosidase 1 (.1) AT5G08370 465 / 7e-164 ATAGAL2 alpha-galactosidase 2 (.1.2) AT3G56310 417 / 2e-144 Melibiase family protein (.1.2) AT3G26380 76 / 1e-14 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017365 [exp] 655 / 0 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1) Lus10024401 [exp] 477 / 6e-168 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 467 / 1e-164 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 466 / 3e-164 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 466 / 8e-164 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 456 / 4e-160 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 441 / 4e-154 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 419 / 5e-145 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 415 / 1e-142 AT3G56310 646 / 0.0 Melibiase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255200 [exp] 575 / 0 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.018G152200 [exp] 486 / 1e-171 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.004G038100 [exp] 468 / 2e-164 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 468 / 2e-164 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 419 / 4e-145 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 71 / 4e-13 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 68 / 5e-12 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 66 / 1e-11 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10010160 pacid=23154184 polypeptide=Lus10010160 locus=Lus10010160.g ID=Lus10010160.BGIv1.0 annot-version=v1.0 ATGGGCGGAAGCAGTACAATCGCCGGCGAGCTGGTAGCGGTACTAGTTCTGTTATCGTCATCATCGTGGTGGAGCTCATTACCTGCCGTTGCTGCAGCCG ATCGACGCAGCCTGATCGCCAATGGCCTCGGCATGACTCCTCCCATGGGGTGGAACAGCTGGAACCATTTTCACTGCAACATCAGTGAGACCACCATCAA AGCCACTGCGGATGCCTTGGTCTCCAGTGGCCTTGCTAGACTCGGATACACTTATGTCAACATTGATGATTGCTGGGCCGAAAAGAGTCGAGACTCGAAG GGCAACCTAAGGCCTAAGAAATCGACATTTCCCTCCGGGATCAAAGCGCTGGCGGACTATGTCCATAGCAAAGGTCTCAAACTGGGAATATACTCGGATG CTGGCTACTACACTTGCAGCAAAACTCAGCCTGGTTCACTTGGGTATGAGGAACAGGACGCCAAAACTTTCGCTTCCTGGGGTATTGATTATTTGAAGTA TGATAACTGTTTCAACGACGGTTCTAAACCAACTGTCAGGTACCCAGTGATGACTCATGCTCTGTTGAAGGCTGGGCGCCCTATCTACTTCTCCCTTTGT GAATGGGGGGATTTGCATCCAGCTGAATGGGGCTTCAACGTCGGGAACAGTTGGCGAACAACCAACGACATTTCCGACTCATGGGAAAGCATGATCTCGA AAGCGGACGAGAACGAGGTGCACGCGCAGCACGCACGTCCCGGAGGATGGAACGACCCGGACATGCTCGAAGTCGGCAACGGAGGGATGACCGACAACGA GTACGTCGTCCACTTCAGCCTATGGGCCATCTCCAAGTCCCCGCTCCTCCTCGGCTTCGACGTAAGCAACGCCTACACGATTCGCAGCGTGCTGCGAATC GTGGGGAACAAAGAAGCGATCGGGATCAACCAAGATCCGCTGGGGATCCAGGCCAAGAAGGTGAGGATGGAAGGCAACAAGGAGATATGGGCCGGTCCGC TGCGGGATTACCGGTTCGCCGTGTTGCTGCTCAACCGGGCGAACTATGAAGACGGCAGCGATGATTTGTTGACGGCGTTATGGGAGGACGTCGGGATTCC GACGGGAGCGGTTGTGGAGGCTAGGGATGTTTGGGAGGGGAAGACGTTGGGGGAGGTGTTTGGTGGTGGGAATATAACGGCGAGGGTTCCGGCGAGGTCC TGCAAGCTCTACATTTTGAAGCCCGTTGCTTGA
AA sequence Show only first row Show all	>Lus10010160 pacid=23154184 polypeptide=Lus10010160 locus=Lus10010160.g ID=Lus10010160.BGIv1.0 annot-version=v1.0 MGGSSTIAGELVAVLVLLSSSSWWSSLPAVAAADRRSLIANGLGMTPPMGWNSWNHFHCNISETTIKATADALVSSGLARLGYTYVNIDDCWAEKSRDSK GNLRPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYYTCSKTQPGSLGYEEQDAKTFASWGIDYLKYDNCFNDGSKPTVRYPVMTHALLKAGRPIYFSLC EWGDLHPAEWGFNVGNSWRTTNDISDSWESMISKADENEVHAQHARPGGWNDPDMLEVGNGGMTDNEYVVHFSLWAISKSPLLLGFDVSNAYTIRSVLRI VGNKEAIGINQDPLGIQAKKVRMEGNKEIWAGPLRDYRFAVLLLNRANYEDGSDDLLTALWEDVGIPTGAVVEARDVWEGKTLGEVFGGGNITARVPARS CKLYILKPVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10010160 [exp]	0	1
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	17.2	0.6924
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	35.1	0.7059
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	44.9	0.6907
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	46.0	0.7053
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	71.0	0.6837
AT3G02125			unknown protein		Lus10013196 [exp]	81.1	0.6812
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	81.7	0.6713
AT1G54740			Protein of unknown function (D...		Lus10029969 [exp]	86.5	0.6971
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	90.4	0.6714
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	99.3	0.6783

Compare expression of checked genes

Lus10010160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.