Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20020 580 / 0 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 231 / 2e-73 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 230 / 2e-72 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT1G04870 204 / 2e-62 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G12270 194 / 1e-56 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G06930 167 / 6e-47 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 162 / 3e-45 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017367 [exp] 667 / 0 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10040546 [exp] 223 / 2e-69 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10000982 [exp] 223 / 3e-69 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 195 / 4e-58 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10019439 [exp] 189 / 2e-56 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043295 [exp] 188 / 2e-56 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10008664 [exp] 172 / 2e-48 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 170 / 2e-47 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10043412 [exp] 167 / 1e-46 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000300 [exp] 587 / 0 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.014G004000 [exp] 325 / 3e-112 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.006G149400 [exp] 227 / 4e-71 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 221 / 5e-69 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G071200 [exp] 202 / 5e-62 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.001G030200 [exp] 166 / 6e-46 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 162 / 6e-45 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 156 / 4e-43 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.012G106600 [exp] 42 / 0.0005 AT4G25080 453 / 1e-161 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10010162 pacid=23154245 polypeptide=Lus10010162 locus=Lus10010162.g ID=Lus10010162.BGIv1.0 annot-version=v1.0 ATGGCCTACTTCCATTCCTACGCTCATGTCGGTATCCATGAGGAGATGATCAAGGATCGTGTACGGACAGAAACTTACCGGAGTGCAATCTTGCAGCACC AGAGTCATATTGAAGGCAAAGTTGTGTTGGATGTTGGCTGTGGCACTGGAATTCTTGCTATATTTTGTGCTCAAGCTGGTGCTAAGAGGGTATATGCTGT GGATGCCAGTGATATTGCCGTGCAGGCTCGTGAAGTTGTGAAGGCAAACAATTTATCGGACAGGATTGTTGTATTGCATGGGCGAGTTGAGGATGTTGAA ATCGATGAGGAGGTTGATGTTATAGTTTCAGAATGGATGGGCTACATGCTTTTATACGAGAGCATGCTGGGAAGTGTAATTACTGCTAGAGATAAATGGT TAAAACGTGGAGGTCTAATTCTCCCATCACATGCAACGTTGTACATGGCGCCTATCACACATCCTGATCGATACACAGAAAGCATCGACTTTTGGCGCAA TGTTTATGGAATTGACATGTCTGCCATGTTGCCGTTAGCTAAACAGTGTGCATTTGAAGAGCCATCAGTGGAGACTATAAGCGGTGAAAATGTGTTAACA TGGCCCCATGTGGTCAAGCACGTGGACTGCTATACACTTCAAATTCATGAGCTAGAATCTGTTACAACACGGTTTAAGTTCGAGTCCATGATGAGAGCTC CATTCCATGGGTTTGCATTCTGGTTCGATGTGGAATTCAATGGACCTGCAAACTCTGATGTGAACTCAACTGCTCAGCTTTTACCACCCGAATCTCTGAA TCCTCCCTCATTGGATGGTATAGTAAAAAAGAAGAAGAGGTCAAACCCAAATGACTCGCTTATACTTTCTACTGCTCCAGAGGACCCTCCCACACATTGG CAACAGACGTTGATATACTTCTATGAGCCAATAGAGGTGGAGCAAGATCAAGTAATAGAAGGCTCATTGACATTGTCACAGAGCAAAGAAAACCGTAGAT TCATGAATATTCACCTTGAGTACAGCTCCGGTGGCCGGTCTTTCGTGAAGGAGTCGGTTATGAGATAA
AA sequence Show only first row Show all	>Lus10010162 pacid=23154245 polypeptide=Lus10010162 locus=Lus10010162.g ID=Lus10010162.BGIv1.0 annot-version=v1.0 MAYFHSYAHVGIHEEMIKDRVRTETYRSAILQHQSHIEGKVVLDVGCGTGILAIFCAQAGAKRVYAVDASDIAVQAREVVKANNLSDRIVVLHGRVEDVE IDEEVDVIVSEWMGYMLLYESMLGSVITARDKWLKRGGLILPSHATLYMAPITHPDRYTESIDFWRNVYGIDMSAMLPLAKQCAFEEPSVETISGENVLT WPHVVKHVDCYTLQIHELESVTTRFKFESMMRAPFHGFAFWFDVEFNGPANSDVNSTAQLLPPESLNPPSLDGIVKKKKRSNPNDSLILSTAPEDPPTHW QQTLIYFYEPIEVEQDQVIEGSLTLSQSKENRRFMNIHLEYSSGGRSFVKESVMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	0	1
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Lus10042886 [exp]	2.0	0.8802
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	3.2	0.8605
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	3.9	0.8905
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	6.0	0.8473
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	7.3	0.8903
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	7.9	0.8870
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	8.9	0.8780
					Lus10017515 [exp]	11.7	0.8725
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	12.1	0.8702
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	21.7	0.8112

Compare expression of checked genes

Lus10010162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.