Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20000 455 / 1e-162 TOM40 translocase of the outer mitochondrial membrane 40 (.1) AT1G50400 402 / 2e-141 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017368 [exp] 623 / 0 AT3G20000 457 / 2e-163 translocase of the outer mitochondrial membrane 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000200 [exp] 528 / 0 AT3G20000 482 / 4e-173 translocase of the outer mitochondrial membrane 40 (.1) Potri.014G004100 [exp] 525 / 0 AT3G20000 480 / 1e-172 translocase of the outer mitochondrial membrane 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10010163 pacid=23154170 polypeptide=Lus10010163 locus=Lus10010163.g ID=Lus10010163.BGIv1.0 annot-version=v1.0 ATGGCAGGGCTTCTACCTCCCATCGTCGATGCACCACAGGAGAAGATCGATGAAGTCGCGAAGAAAACCGACTACTTCAAGCTTCCTTGCCCCGTTCCCT TCGAGGAGATTCAGCGTGAAGCCATCAGTTCAGTTCCTACTCTCCCTCTGGTGTCTTTAAAGCCTGAGCTCTTTGAGGGGATGCGTTTCGACTTTAGCAA GGGGCTTAACCAGAAGTTTTCACTCTCCCACAGTGTTTTCATGGGTCCCATGGAACTTCCTTCTCAAGGTGCTGAAACTATTAAAATCCCCACTGCCCAT TATGAATTTGGTGCCAACTTCATTGACTCAAATTTGATGCTCATTGGCAGGGTCTTGACCGATGGGAGACTAACTGCAAGAGTGAAATGTGACTTAACTG ATGATCTTAGTTTAAAGGCTAATGCTCAGCTTTCAAATGAGCCCAATATGTCTCATGGCATGGCCAACTTCGATTACAAGGGCAAAGACTTCCGAGGTCA ACTTCAATTGGGAGATGGTTCCTTGTTTGGTGCTAGTTACATTCAGAGCATTACTCCACATTTATCCATGGGTGGTGAAGTATTTTGGGCTGGCCAGCAT TTAAAGTCTGGAGTTGGGTATGCTGCTCGGTACGACACTGATAAGATGGTTGCAACAGCGCAAGTTGCCAGCACTGGGATGATTGCCATGAGCTACGTTC AGAAGGTCTCAGAGAAGGTCTCATTGGCATCGGATTTCATGTATAACTACCTTTCAAGAGATGTTACTGCAAGTGTTGGTTATGACTACATCCTAAGACA AGCTCGCCTGAGAGGGAAGATAGACTCTAATGGGTGTGCTTCCGCATTCTTGGAGGAACGGTTGAATATGGGTCTCAACTTTGTTTTGTCTGCTGAGGTG GATCATAAGAAGAGCGACTACAAGTTCGGATTCGGGTTGACAGTCGGGTAG
AA sequence Show only first row Show all	>Lus10010163 pacid=23154170 polypeptide=Lus10010163 locus=Lus10010163.g ID=Lus10010163.BGIv1.0 annot-version=v1.0 MAGLLPPIVDAPQEKIDEVAKKTDYFKLPCPVPFEEIQREAISSVPTLPLVSLKPELFEGMRFDFSKGLNQKFSLSHSVFMGPMELPSQGAETIKIPTAH YEFGANFIDSNLMLIGRVLTDGRLTARVKCDLTDDLSLKANAQLSNEPNMSHGMANFDYKGKDFRGQLQLGDGSLFGASYIQSITPHLSMGGEVFWAGQH LKSGVGYAARYDTDKMVATAQVASTGMIAMSYVQKVSEKVSLASDFMYNYLSRDVTASVGYDYILRQARLRGKIDSNGCASAFLEERLNMGLNFVLSAEV DHKKSDYKFGFGLTVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	0	1
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	1.0	0.9734
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	2.2	0.9636
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	3.0	0.9664
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	3.2	0.9667
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	3.7	0.9620
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	4.0	0.9660
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	4.5	0.9573
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	5.4	0.9462
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	6.0	0.9625
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	6.7	0.9573

Compare expression of checked genes

Lus10010163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.