Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24370 56 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017369 [exp] 155 / 2e-48 AT4G24370 82 / 6e-20 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010164 pacid=23154177 polypeptide=Lus10010164 locus=Lus10010164.g ID=Lus10010164.BGIv1.0 annot-version=v1.0 ATGAAGAATTGCGGCGGCTACAACAGCAACGGCGGCGAGAAGGAAAAGGGTGCGACGGCGAGAAGTAGAAGAAGAGACGGCGGCGGAACAACTGGGATTG AAGATGACGCGGCAGTGGAAGAGCTGCTCCAATCTGCGCAGGACGAGATGATGCTGAAGCTTTCCGTGGATTCCCACACCACGAAACTCCCCAAAGATTC CCTTCCTTCCGATCTCCGCCGCCGTTTCGACGCCCTCAAATCAGTTCCCGCCATATCTATCAACAGCTCCTCCTCCGCCGCCGCCGCCTCCAGCGGCGTT TCTGAGCCAACGGAGAAGGATCTGATGGCCAGATTCAATGCTCTCCAAGGTAAAAAGGATGGTGCATCTGCTGCTCCGATTGCTGTCTTCCCTTCATCTG ATCGTAGTAGCGGAATCGTTGACGAGGAAGATGACGAGGAGGATGAGGTTGAGAAGATCATTAGGTGGGCCAAGGATGCTGCCCGTCTTGACCCATCTCC GGCTTCCGACAGCGACGACGGTGACTTATCAGAGTAG
AA sequence Show only first row Show all	>Lus10010164 pacid=23154177 polypeptide=Lus10010164 locus=Lus10010164.g ID=Lus10010164.BGIv1.0 annot-version=v1.0 MKNCGGYNSNGGEKEKGATARSRRRDGGGTTGIEDDAAVEELLQSAQDEMMLKLSVDSHTTKLPKDSLPSDLRRRFDALKSVPAISINSSSSAAAASSGV SEPTEKDLMARFNALQGKKDGASAAPIAVFPSSDRSSGIVDEEDDEEDEVEKIIRWAKDAARLDPSPASDSDDGDLSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24370			unknown protein		Lus10010164 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	7.8	0.8023
					Lus10032951 [exp]	17.0	0.7780
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	18.1	0.7826
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	19.0	0.7833
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	33.2	0.7730
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10008693 [exp]	35.0	0.7664
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029542 [exp]	35.9	0.7171
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	36.2	0.7653
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	36.7	0.7316
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	38.9	0.7579

Compare expression of checked genes

Lus10010164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.