Plant FIBer expression Database

Lus10010165 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08580 426 / 2e-149 Calcium-binding EF hand family protein (.1)
AT4G27790 190 / 1e-57 Calcium-binding EF hand family protein (.1)
AT3G59440 50 / 5e-07 Calcium-binding EF-hand family protein (.1)
AT2G41100 44 / 0.0001 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4)
AT2G43290 43 / 0.0001 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
AT2G41090 41 / 0.0004 Calcium-binding EF-hand family protein (.1)
AT4G36070 42 / 0.0007 CPK18 calcium-dependent protein kinase 18 (.1.2)
AT1G05990 40 / 0.0007 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017370
[exp]
551 / 0 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1)
Lus10022381
[exp]
181 / 3e-54 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1)
Lus10005911
[exp]
76 / 1e-15 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1)
Lus10041914
[exp]
42 / 0.0007 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1)
Lus10028459
[exp]
42 / 0.0009 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G087600
[exp]
471 / 3e-167 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1)
Potri.007G076300
[exp]
456 / 1e-161 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1)
Potri.015G010300
[exp]
166 / 1e-48 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1)
Potri.002G239100
[exp]
40 / 0.0009 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0220 EF_hand PF10591 SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region
Representative CDS sequence
>Lus10010165 pacid=23154174 polypeptide=Lus10010165 locus=Lus10010165.g ID=Lus10010165.BGIv1.0 annot-version=v1.0
ATGTTGGTAACGTGCTACTCTCCCACACCCCCACCAAACCCTCCACTCACCGCCGTCTCAAGCTCCGTTCCAATTTCAACTTCAACAATCCTCATAATCC
CCACCACCACGAACCCCTCCCATCAAGAGGCTCCCCCCGCCGCTTATCACTCCCCGCCAGCCCCCGGCCACGAGTCCCAGCCCGAGTGGGAGGATTTCGT
CGAAGCTGAGGACTACTTGAACGACGAGGAGAAATTCAATGTCACCAATAGGCTGCTGTTGCTTTTCCCCAAGATTGACGTGGAACCTGCGGATGGCTAC
GTCGATGAGCATGAGCTTACCGAGTGGAACTTGAACCAGGCTGAGAAGGAAGTGTTGCACCGTACACAGAGAGAGATGGATGTTCATGATAAGAATCATG
ATGGATTTATCTCGTTTTCTGAGTATGATCCACCTAGTTGGGCTATTAATTCAGAACCGAGTTCGTTTGGCCATGACATGGGTTGGTGGAAGGAAGGACA
TTTCAACGCATCGGATGCAGATGGGGATGGTCTTCTTAATATCACAGAGTTCAATGACTTCTTGCATCCAGCTGACAGTAAAAACCCCAACCTACTACAA
TGGTTGTGCAAGGAGGAAGTCAGTGAAAGAGATACAGACAAGGATGGGAAAGTAAGCTTCAACGAATTTTTCCATGGCCTTTTTGACTTGGTAAGGAACT
ACGATGAGGAAGGGCATAACACCTCTCATTCATCCGACGACGATTCAATGGAGGCTCCTGCTAAGACACTGTTTGTTCAGCTGGACAAAAATAACGACGG
GTTTCTTTCGGATGACGAATTATTTCCCATAGTTGGGAAACTTCATCCTTCTGAACGTTACTATGCCAAGCAACAAGCCGATTATATAATATCACAGGCA
GATGAAGATAAGGATGGTAAACTGACGTTGAGAGAGATGCTAGATAACCCGTATGTATTCTACAGTGCGATTTTCACGGACGAGGATGAAGATGATTACG
ATATACACGACGAGTTCCGGTAA
AA sequence
>Lus10010165 pacid=23154174 polypeptide=Lus10010165 locus=Lus10010165.g ID=Lus10010165.BGIv1.0 annot-version=v1.0
MLVTCYSPTPPPNPPLTAVSSSVPISTSTILIIPTTTNPSHQEAPPAAYHSPPAPGHESQPEWEDFVEAEDYLNDEEKFNVTNRLLLLFPKIDVEPADGY
VDEHELTEWNLNQAEKEVLHRTQREMDVHDKNHDGFISFSEYDPPSWAINSEPSSFGHDMGWWKEGHFNASDADGDGLLNITEFNDFLHPADSKNPNLLQ
WLCKEEVSERDTDKDGKVSFNEFFHGLFDLVRNYDEEGHNTSHSSDDDSMEAPAKTLFVQLDKNNDGFLSDDELFPIVGKLHPSERYYAKQQADYIISQA
DEDKDGKLTLREMLDNPYVFYSAIFTDEDEDDYDIHDEFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G08580 Calcium-binding EF hand family... Lus10010165
[exp]
0 1
AT3G20820 Leucine-rich repeat (LRR) fami... Lus10031824
[exp]
2.8 0.8028
AT3G04120 GAPC1, GAPC-1, ... glyceraldehyde-3-phosphate deh... Lus10032071
[exp]
3.5 0.7707
AT1G66150 TMK1 transmembrane kinase 1 (.1) Lus10021275
[exp]
8.4 0.7643
AT4G21500 unknown protein Lus10011256
[exp]
9.4 0.7923
AT5G65470 O-fucosyltransferase family pr... Lus10002653
[exp]
11.6 0.7362
AT5G65470 O-fucosyltransferase family pr... Lus10012732
[exp]
12.6 0.7235
AT4G23820 Pectin lyase-like superfamily ... Lus10023101
[exp]
13.1 0.7696
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10008716
[exp]
14.7 0.7058
AT5G40960 Protein of unknown function (D... Lus10035200
[exp]
16.0 0.7321
AT1G02000 GAE2 UDP-D-glucuronate 4-epimerase ... Lus10038911
[exp]
16.1 0.7484

Lus10010165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.