Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 230 / 2e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 228 / 6e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 223 / 1e-73 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G13200 155 / 3e-46 GRAM domain family protein (.1) AT2G22475 151 / 1e-44 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 147 / 2e-43 FIP1 FH interacting protein 1 (.1) AT4G01600 146 / 3e-43 GRAM domain family protein (.1.2) AT4G40100 95 / 1e-23 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017372 [exp] 452 / 5e-164 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 252 / 5e-85 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 238 / 2e-79 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017373 [exp] 238 / 3e-79 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 238 / 4e-79 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10031986 [exp] 152 / 3e-45 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 149 / 5e-44 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10040539 [exp] 146 / 7e-43 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 144 / 6e-42 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088400 [exp] 264 / 9e-90 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 260 / 4e-88 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 259 / 6e-88 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075700 [exp] 243 / 3e-81 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075200 [exp] 242 / 4e-81 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 231 / 9e-77 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 223 / 3e-73 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.003G165400 [exp] 160 / 5e-48 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.001G323300 [exp] 159 / 1e-47 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.003G165500 [exp] 156 / 2e-46 AT5G13200 328 / 3e-113 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10010166 pacid=23154207 polypeptide=Lus10010166 locus=Lus10010166.g ID=Lus10010166.BGIv1.0 annot-version=v1.0 ATGAAGAACCCATTTCAGATCACAGGAATTATTCCAGTCAGCTCATTGTCACGCATAGTTAAGAAGCCACATTCTGCTACTGCAGAGTACTTAACTGATA CCACATCTGATGCTCAGAACAGATGCAGTGCTTGTAGTACTGCTACTGATTCGCAGGCGGTCCGACAAGATCATAGGAGAGAGGTTCGAAAAAAAGCAGA CAGTTTCGCCAATCGCATTAAAGAGCATGTGAGATTGGGACCAAAGATCACAGAAACTGTGAAAGGCAAGTTGAGGTTAGGGGCTAAAATCCTACAAGGA GGAGGATTGGAGAGAATTTTCAAGCAGTTATTTAGTGTTGATGATGAAGATGAAAAGTTGTTGAAGGCCTCACAATGCTATCTTTCGACAACTGCCGGAC CGATCGCAGGCCTCTTGTTCATCTCCACGCACAAACTCGCGTTCTGCAGCGACAGATCGATCAAATTCTCGTCCCCGAATGGAGAATCGATCAGAGTGCA CTATAAGGTGGTGATTCCACTGAGCAAGATCAAGAGAGTTAATCAGAGTGAGAATGCAAAGAGACCTTCCCAGAAGTATGTGGAGGTTGTAACTGTGGAC AACTTTGACTTCTGGTTCATGGGGTTCCTGAATTACCTGAAGGCTTTCATGCATATTGAGCTGGCCATTGTTTCTCAGAATCACAGATGTGCTCAGATAA AATGCTAG
AA sequence Show only first row Show all	>Lus10010166 pacid=23154207 polypeptide=Lus10010166 locus=Lus10010166.g ID=Lus10010166.BGIv1.0 annot-version=v1.0 MKNPFQITGIIPVSSLSRIVKKPHSATAEYLTDTTSDAQNRCSACSTATDSQAVRQDHRREVRKKADSFANRIKEHVRLGPKITETVKGKLRLGAKILQG GGLERIFKQLFSVDDEDEKLLKASQCYLSTTAGPIAGLLFISTHKLAFCSDRSIKFSSPNGESIRVHYKVVIPLSKIKRVNQSENAKRPSQKYVEVVTVD NFDFWFMGFLNYLKAFMHIELAIVSQNHRCAQIKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08350			GRAM domain-containing protein...		Lus10010166 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	2.0	0.8807
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	9.2	0.8222
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	10.2	0.8090
AT1G52342			unknown protein		Lus10043217 [exp]	11.0	0.8047
					Lus10022166 [exp]	12.5	0.7919
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	15.4	0.8387
AT5G05180			unknown protein		Lus10029012 [exp]	20.2	0.8170
					Lus10025141 [exp]	20.9	0.8290
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	22.3	0.8217
					Lus10025225 [exp]	22.9	0.8284

Compare expression of checked genes

Lus10010166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.