Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 243 / 1e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 234 / 7e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 226 / 7e-74 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 221 / 8e-73 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G01600 151 / 2e-45 GRAM domain family protein (.1.2) AT1G28200 145 / 1e-42 FIP1 FH interacting protein 1 (.1) AT5G13200 135 / 9e-39 GRAM domain family protein (.1) AT2G22475 135 / 2e-38 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 89 / 2e-21 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017373 [exp] 427 / 5e-154 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 355 / 2e-125 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 341 / 8e-120 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 248 / 3e-83 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 236 / 1e-78 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10031986 [exp] 143 / 1e-41 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 140 / 2e-40 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10010279 [exp] 134 / 1e-38 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 134 / 4e-38 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075200 [exp] 315 / 1e-109 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075700 [exp] 314 / 2e-109 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 310 / 1e-107 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 278 / 2e-95 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 277 / 5e-95 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 261 / 1e-88 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 211 / 1e-68 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.014G109700 [exp] 150 / 6e-45 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165500 [exp] 144 / 5e-42 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165700 [exp] 143 / 2e-41 AT5G13200 326 / 1e-112 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10010167 pacid=23154213 polypeptide=Lus10010167 locus=Lus10010167.g ID=Lus10010167.BGIv1.0 annot-version=v1.0 ATGAAGGGTTCATATCATCAGGAACAAGTTATTGGAGTTCCAATGAAGGGTTCATTTGCTGCAAAGATGGCACCTTTACTTCTTGAAGATGCACCACAGC GCTACATCCCTACTCCAGCACACAAATCTCTGATGCTGAAACAAAGTAAATCATCACAGCCATCGGATTCAATGCTGAAAAGGATCAACAACAAGCTCGG CAAGAAGGCTGACAAATTCGTGCATGGAATCCGGGAGCATGTGAAACTGGGGAGCAAGATAACCGATACCTTGAAGGGGAAGCTAACTCTCGGAGCTCGA ATCCTCCAAGTCGGAGGAGTAAGGAAAGTGTTTCGACAGCTCTTCACTATTTCCGAAGGAGAAAGACTGTTGAAAGCTTCCCAATGCTATCTATCAACAA GTGCTGGCCCCATTGCCGGCCTCCTCTTCATATCAACCCACAAGCTTGCATTCTGCAGCGAGAGATCGATCCAATTGTCTTCCCCCGAAGGCAAGAAATC GATCAGAGTCCATTACAAGGTTCAGATTCCGCTCGAAAAAGTAGAGATGGCTAACCAGAGCGAGAACATGAAGAATCCATCGCAGAAGTATATGGAGGTA GTCACCATTGACGGGTTCGATTTCTGGTTCATGGGTTTCTTGAGTTACAAGAAAGCTTTCAAGTGCCTTGAGCAAGCAATGTCTGGTAGCAGAGCTTCAG CTACCAGGTGA
AA sequence Show only first row Show all	>Lus10010167 pacid=23154213 polypeptide=Lus10010167 locus=Lus10010167.g ID=Lus10010167.BGIv1.0 annot-version=v1.0 MKGSYHQEQVIGVPMKGSFAAKMAPLLLEDAPQRYIPTPAHKSLMLKQSKSSQPSDSMLKRINNKLGKKADKFVHGIREHVKLGSKITDTLKGKLTLGAR ILQVGGVRKVFRQLFTISEGERLLKASQCYLSTSAGPIAGLLFISTHKLAFCSERSIQLSSPEGKKSIRVHYKVQIPLEKVEMANQSENMKNPSQKYMEV VTIDGFDFWFMGFLSYKKAFKCLEQAMSGSRASATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	0	1
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	1.4	0.8712
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	3.2	0.7858
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	3.5	0.8207
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	5.5	0.7931
AT2G31690			alpha/beta-Hydrolases superfam...		Lus10025519 [exp]	5.5	0.7767
					Lus10037674 [exp]	6.2	0.7657
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	6.3	0.7861
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	7.4	0.7851
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	8.8	0.7894
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	11.4	0.7412

Compare expression of checked genes

Lus10010167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.