Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32500 465 / 3e-161 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) AT4G04770 75 / 4e-14 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 54 / 2e-07 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017374 [exp] 816 / 0 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10034750 [exp] 71 / 8e-13 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10025788 [exp] 67 / 1e-11 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10035874 [exp] 67 / 1e-11 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10009638 [exp] 54 / 2e-09 AT1G32500 54 / 3e-10 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144500 [exp] 559 / 0 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.003G089700 [exp] 541 / 0 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.004G016900 [exp] 71 / 7e-13 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [flax] [poplar] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Lus10010168 pacid=23154235 polypeptide=Lus10010168 locus=Lus10010168.g ID=Lus10010168.BGIv1.0 annot-version=v1.0 ATGTCTGCCTTAGCCTTTTCTCCCTCTGTAATTCGCACTCCAACAAACTCCACCTTCAGCCAATCCAAATCCCGCCCCAAATTCCACACCAATGTCTCCC TCTCCGCAGCAGCACCCACCGGAATCGGCTTCTCCGATCCCTTCGTCCTCCAATTAGCCGAAACCCTGGAAGACTCCTCCGCCACCTCTTCTTCTTCTAC CCTCCAGAACCTCCGAGACTCGTCCTCCGAATCCTTAGTCTCCACACCTTGGCCCTCCCGCAAAGATGAAGCCTTTCGGTTCACAGACACTTCATTCATC AAGCAATCCCAAATCCTCCCAATTTCTCAACCTCCTCCAATTGCTGACCTGGCAACGACCATGTCTGAAGAAACCAACTTCTCATCTCATCTTGTTATAG CTGATGGCTACCTGCTGAATGCCACCTCGACTGCTTTGTATAATTTGCCTGGTGGGGTTTTTGTGGGGAGTTTGTGTGAAATTTCTGAAAAGGTTGCTTC TTTGATGAGTGATTTCCAGTATGGTGATCTGTTTTGGTCGATTAATGGGTTAGGGGCACCGGATGTTGCTGTGGTTTATGTTCCAGCTGGGGTTAGAGTA GAGAATCCTATCCATTTGAAGTATTTGTCTGTTCAAGGGGAGGAATGTGGATCCAAAGTGTTGCCACTTTCAAATCCTAGAGTGTTTGTGGTGGTGGAAG AAGGAGGGGAGGTTGGGATTATAGAAGAGTTTATGAGCAGTGAAGGGAATGAGGATAAGTGTTATTGGTCTAATTCAGTGCTTGAGGTGGTGATTGGCAA AGGCGCTAAAGTTAAGCATTCTTATGTGCAGAATCAGTCATTTAACTCTGCTCATATCAAGTGGACTTCGGTGAAGCAGGAATCAGCTAGTAGCTACGAG CTTGTGGAGGCAAGCAGTGGTGGGAAGTTAAGCAGGCACAATCTCCACATCCAGCAGCTGGGCCCGGACACCGAGACAGAAGTCTCAACCTTTCATTTGT CTGCCGGGAATCAGACGCAGGATCTCCACAGTAGGCTGATCTTCGATCATCCGAGGGCTTCCAGTCGACAGCTTCACAAGTGCATTGTTGCTCACTCCTT GGGACAAGCTGTGTTCGATGGGAACGTGAGGGTGAACCGGTATGCACAGCAGACAGATGCAGGGCAATTGACAAGGAGCTTGTTGTTGGAGCCACAGGCA ACTGTGAACATAAAACCGAACCTCCAAATCATTGCTGACGATGTGAAGTGCTCTCACGGAGCTGCGATTAGCGACCTGGAAGACGACCAGATATTCTACA TGCGGGCTAGAGGCATCGACTTGGACGCAGCGAGAAAAGCCCTGGTGTTTTCGTTCGGGAAGGAGGTAATCAATCGGCTCTCGCATTCATATCTACAGAA GGGAGTCGAGAGACAAGTAAAGGAGGTTCTTGCGAGGCTGTAA
AA sequence Show only first row Show all	>Lus10010168 pacid=23154235 polypeptide=Lus10010168 locus=Lus10010168.g ID=Lus10010168.BGIv1.0 annot-version=v1.0 MSALAFSPSVIRTPTNSTFSQSKSRPKFHTNVSLSAAAPTGIGFSDPFVLQLAETLEDSSATSSSSTLQNLRDSSSESLVSTPWPSRKDEAFRFTDTSFI KQSQILPISQPPPIADLATTMSEETNFSSHLVIADGYLLNATSTALYNLPGGVFVGSLCEISEKVASLMSDFQYGDLFWSINGLGAPDVAVVYVPAGVRV ENPIHLKYLSVQGEECGSKVLPLSNPRVFVVVEEGGEVGIIEEFMSSEGNEDKCYWSNSVLEVVIGKGAKVKHSYVQNQSFNSAHIKWTSVKQESASSYE LVEASSGGKLSRHNLHIQQLGPDTETEVSTFHLSAGNQTQDLHSRLIFDHPRASSRQLHKCIVAHSLGQAVFDGNVRVNRYAQQTDAGQLTRSLLLEPQA TVNIKPNLQIIADDVKCSHGAAISDLEDDQIFYMRARGIDLDAARKALVFSFGKEVINRLSHSYLQKGVERQVKEVLARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	0	1
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	1.4	0.9425
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	3.2	0.9309
AT3G04310			unknown protein		Lus10004401 [exp]	3.3	0.9085
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	3.5	0.9203
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	3.6	0.9048
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	9.4	0.8979
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	10.8	0.8771
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	19.7	0.8915
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	24.2	0.9059
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	24.3	0.9163

Compare expression of checked genes

Lus10010168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.