Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 357 / 3e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 350 / 9e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 343 / 4e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 339 / 8e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 323 / 5e-98 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 301 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 301 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G52850 301 / 1e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20770 295 / 1e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 293 / 9e-87 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 342 / 2e-104 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 342 / 3e-104 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 343 / 5e-104 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 332 / 5e-102 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 327 / 2e-100 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 328 / 1e-98 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 311 / 4e-93 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 309 / 4e-92 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014707 [exp] 305 / 7e-91 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027400 [exp] 803 / 0 AT4G13650 408 / 8e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 361 / 7e-111 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 358 / 7e-111 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 359 / 5e-110 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 353 / 7e-109 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 341 / 1e-103 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G100600 [exp] 311 / 5e-94 AT1G16480 397 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G184800 [exp] 311 / 2e-93 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 307 / 3e-92 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068600 [exp] 310 / 5e-92 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010169 pacid=23154241 polypeptide=Lus10010169 locus=Lus10010169.g ID=Lus10010169.BGIv1.0 annot-version=v1.0 ATGAGATGCTTAGGCAACCGTCTTACTTCAAAGTTCACATCTTTCCTTTCTTCTACTCAGAAACCAAACTTCAAGCATCGATATTATCTCTGCACATTTC TTCCTCAGTGGTCTTCCAGTTCCAATTTGTGTTTGGAGGAAGACCCTATTGCCATAGCTGATGCCTTGTCCTTCTCGCTGAATTCTAACTCATCAACTCT GGGAACTCAAATCCATAGCTATGTTATTAAGATCGGGTTCAACAACGATGTGTTCACTCAGAACAATCTCATCCGTATGTACACGAAAGGTAGCTGTTTG GCTCATGGACGCAAGGTGTTCGATGAAATGCCCGAGAGAAATGTTGTTTCTTGGGCCTTGCTCATCTCTGGTGCAGTCCAGTGTTTCGAACCAGAATTGG CATTGGAGACGTACATGGATATGACAAGAACTGGTTTGATGCCGAATGAGTTTGTTCTTGGTAGCGTTCTGAAAGGTTGTGCATTTATGGAAGCTGGAGG GTTCGGCGTGTCTGTTCATTGCTGGTCGCTGAAATCCGGGTTTGAATGGAACCCATACGTTGGCAGTTCAATGTTGAGCTTCTATTGTAAAATGGAGGAT ACTGCAGCAGCGGAAAGAGTTTTCGAGTCGATGGAAAAAGTCGACGTTGGTTGTTGGAATGCCATCCTTGGAGGCTACGCCAAATCCGGTTACGGACATA AAGCTCTAAGAATCGCATCGTCAATGCGGCATCTGGGACTAGAATTCGACCGGTATACCTTCATCAGTTCTCTTCACGGAAGCTCGATAGCTTCTGATTT GGATTTCGGGAAGCAGATTCATGGATTGACTCTCAGAACAGGAGAATCGTGTAGTACTTCCGTCATGAATGCTCTTATGGACATGTACACTAAGAACGGC GTAGTGGAGTCTGCTATGAAAGTATTTAGAGTAATGGTTCATAGGGATATTGTGACATGGAATACTGCGTTTGGGAGTTCAAGAGAAGTGGTTAGCCTAT TCCGGGATTTTATGTTGACCGGTTTATGTCCGAATCGTATCACATTCTCATTATTATTCAGGCAATGTGGGGAGCTAGTCGATGCAAAACTCGGTCTACA GCTTTGTTCTCTGGCGATATGCTTTGGATTATTCGATGAGGTTAGCGTTTCTTCCTCTCTTGTGAATATGTTCTCCAGGTGCGGCTTAATGCAAATGGCG AGTTCAGTGGTTGACATCATCTATTGCAAAGATATAGTCATCTGGAATGAGTTGATCTCGGGCTATAACTCGAATGAATTTACCGTAGAAGCACTGCTGA CATTCAGTAACTTGAAGAGAGCAAGTGTTCAAGCAGATGAATACACTTATTCATACATTCTGGAAACCTGTTATAAATATGGCAGCCAGAGAATGATTCA ACAGATTCACGGAGCGATCATCAAATCCGGATTCGCTTCTGACCGGTACATTTGTAGTTCCTTGATTAAAGGCTATGACGAAGTTAAACAAGATTCCATC AGATGTTTCAAATCCCTACTGGAATCCGGTGAGAAACCTGATGAATTCATTCTTTGTAGCATCCTTGGCAGGTATGGTGGGATCAAAGCTGTTCATACTT TAGTCATCAAATCCGGTTATGAGGAAAATGCTTTTGTCTCCAGTGCAATGCTCGATGCTTATGCGAAGTGTGGCAACATAAAGAATGCAAGAACGATCTT CGACCAATCGTTGAAAAGTTTCCACGATGATGTCGTTCTGTACAATGCTATGATGATGGCTTATGCTCATCACGGTCTTGGAATAGAAGCTTTCGACATT TTTGAGAAGATGAAGCTTGCAAATCTCCAGCCCAACCAAGCTACTTTCGTTTCGTTGACATCAGCATGCGGTCATTTGGGAATGGTTGACAGAGGGTGCT TTTTGTTCGAATCGATGAAATCGGTATATGGACTGGAACCTTCGCCTGACAATTACGGTTGCTTGGTGGATATGTTTTCCAGGAATGGGTGCCTTAAAGC TTCTAGACGAGTAATTGAAACGATGCCGTTTCCTCCATGGCCTGCTGTATTACGAGCTTTGCTGAGTGGTTGCAGGATATATGGGAACAAGGAGGTTGGA GAATGGGCAGTTACAAAGTTGGTTTGTTTGGTTCCGGAGAACGATGCTACGACTCGCACTTTGTGGTTGAAAGTTCATTCTGAGAGTGGCGACTGGGAAG AAGTTGCTAATATAAACAACACGATATCGGAGATGGACTTGGGAAAGATCGCAGGTCAGAGTTGGATTGAGGAACATGGCTAG
AA sequence Show only first row Show all	>Lus10010169 pacid=23154241 polypeptide=Lus10010169 locus=Lus10010169.g ID=Lus10010169.BGIv1.0 annot-version=v1.0 MRCLGNRLTSKFTSFLSSTQKPNFKHRYYLCTFLPQWSSSSNLCLEEDPIAIADALSFSLNSNSSTLGTQIHSYVIKIGFNNDVFTQNNLIRMYTKGSCL AHGRKVFDEMPERNVVSWALLISGAVQCFEPELALETYMDMTRTGLMPNEFVLGSVLKGCAFMEAGGFGVSVHCWSLKSGFEWNPYVGSSMLSFYCKMED TAAAERVFESMEKVDVGCWNAILGGYAKSGYGHKALRIASSMRHLGLEFDRYTFISSLHGSSIASDLDFGKQIHGLTLRTGESCSTSVMNALMDMYTKNG VVESAMKVFRVMVHRDIVTWNTAFGSSREVVSLFRDFMLTGLCPNRITFSLLFRQCGELVDAKLGLQLCSLAICFGLFDEVSVSSSLVNMFSRCGLMQMA SSVVDIIYCKDIVIWNELISGYNSNEFTVEALLTFSNLKRASVQADEYTYSYILETCYKYGSQRMIQQIHGAIIKSGFASDRYICSSLIKGYDEVKQDSI RCFKSLLESGEKPDEFILCSILGRYGGIKAVHTLVIKSGYEENAFVSSAMLDAYAKCGNIKNARTIFDQSLKSFHDDVVLYNAMMMAYAHHGLGIEAFDI FEKMKLANLQPNQATFVSLTSACGHLGMVDRGCFLFESMKSVYGLEPSPDNYGCLVDMFSRNGCLKASRRVIETMPFPPWPAVLRALLSGCRIYGNKEVG EWAVTKLVCLVPENDATTRTLWLKVHSESGDWEEVANINNTISEMDLGKIAGQSWIEEHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	1.7	0.8915
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	4.0	0.8506
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	7.4	0.8396
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	8.1	0.8087
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	8.2	0.8403
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	8.9	0.8280
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	11.0	0.8460
AT1G62870			unknown protein		Lus10004325 [exp]	23.0	0.8159
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	27.8	0.8187
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	29.4	0.8328

Compare expression of checked genes

Lus10010169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.