Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19970 504 / 6e-178 alpha/beta-Hydrolases superfamily protein (.1) AT2G18245 229 / 4e-71 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017376 [exp] 793 / 0 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026001 [exp] 221 / 5e-68 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10028314 [exp] 191 / 9e-58 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 94 / 6e-23 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) Lus10014294 [exp] 0 / 1 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075400 [exp] 526 / 0 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G089000 [exp] 523 / 0 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G023000 [exp] 246 / 2e-77 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05705 [flax] [poplar] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Lus10010171 pacid=23154171 polypeptide=Lus10010171 locus=Lus10010171.g ID=Lus10010171.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGTCCGGGATCCTGCAACGGCCCATTGTGGCAGCAGCTGCCGTCGCCGTGGCTTCCGTCTCCACCGATAGATTCCCATCTTTCAGATATT CCAACGGTTCGCTTGAAGAATCCGTTCCGGATTCTGACTTCTCATGGTCTTCTCACATTGCTGTGTCCAAGCTAGCTGATTTCTCCTTTGTCAATAGAAT TCGTGTCCCTTTGCCTAATGTCAACAACTTCCATCGCTCTTCAACCCCATTTTTGGCTGCCAATGCTGGAGCTTCTTCAATGGTTGCTGCATCTCCTCTC CTGGCAGAGTTATACCAGTCAGCTCAACTGGCTAAAGGTCCAAAGCAGCAGAAAATTGTACCTAAGGCTAAGACTACTTTGTCTGCTTCCACTCCGGATG TTCTATACAGATGGCACCTACCGCAACCTAATGCCTCCGGTTTGTCTAATTGCTGTTCTGAGAAATCCAGGACGGTTGTGGTGTTGCTCGGATGGTTGGG ATCGAAGCAGAAGCATCTGAAGAAATATGCTGAATGGTATACCTCTATGGGATTTCATGCTATCACGTTCACGTTTCCAATGTCTGAGATCCTTAGCTAC CAAGTTGGGGGCAAAGCTGAACAGGATGTGGAGTTGCTTGTTAACCATCTTGCTGGGTGGCTGGAAGAGGAAGAGCCTGGGAAGAACTTGGTTTTCCACA CTTTCAGCAATACTGGATGGCTGACGTATGGAGTTATGCTGGAGAAGTTTCAGGAACATGATCCTGCTTTAGTGAAGAGAATTCGGGCTTGCGTTGTGGA TTCTGCACCGGTTGCAACCCCTGATCCACAGGTGTGGGCTTCTGGTTTCTGTGCTGCATTTCTCAAAAAGAACAGCATGGCTACCAAAGGAAACCTTATT TCAGATGTGGAGAAGGTATTAGTTGGCAGTAGTAGTAAATCATCATTCGACCACCAACCGAAGCCTGCGCTAACCGAAACAGCTTTACAATTAGTTCTAG AGAAGTTCTTTGGTGTGGTTCTCAATCTTCCTGCAGTAAACAAGAGATTGTCTGATGTGTTGAGCGTGTTATCGACACAGCAGCCGAAATGCCCGCAGCT GTACATCTACAGCTCTGCAGATAGAGTGATACCGTCCGGATCAGTGGAATCATTCATCGAGGAACAGAAGCGGGCAGGACATGAAGTGAGGGCCTGCAAC TTTGTGTCAACGCCTCACGTTGACCATTTCAGGAATGATCCAAAATTGTATACTAGTCAGCTCACCCATTTTATTGACGATTGTGTGCTTACTTGCTGCA AGCACTCTTAA
AA sequence Show only first row Show all	>Lus10010171 pacid=23154171 polypeptide=Lus10010171 locus=Lus10010171.g ID=Lus10010171.BGIv1.0 annot-version=v1.0 MASLSGILQRPIVAAAAVAVASVSTDRFPSFRYSNGSLEESVPDSDFSWSSHIAVSKLADFSFVNRIRVPLPNVNNFHRSSTPFLAANAGASSMVAASPL LAELYQSAQLAKGPKQQKIVPKAKTTLSASTPDVLYRWHLPQPNASGLSNCCSEKSRTVVVLLGWLGSKQKHLKKYAEWYTSMGFHAITFTFPMSEILSY QVGGKAEQDVELLVNHLAGWLEEEEPGKNLVFHTFSNTGWLTYGVMLEKFQEHDPALVKRIRACVVDSAPVATPDPQVWASGFCAAFLKKNSMATKGNLI SDVEKVLVGSSSKSSFDHQPKPALTETALQLVLEKFFGVVLNLPAVNKRLSDVLSVLSTQQPKCPQLYIYSSADRVIPSGSVESFIEEQKRAGHEVRACN FVSTPHVDHFRNDPKLYTSQLTHFIDDCVLTCCKHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	0	1
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	1.7	0.8987
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10026629 [exp]	3.2	0.8841
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	7.5	0.8896
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	7.9	0.8870
					Lus10024104 [exp]	9.2	0.8842
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	9.9	0.8187
AT2G22790			unknown protein		Lus10011575 [exp]	14.9	0.8434
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	16.6	0.8287
					Lus10042963 [exp]	16.6	0.8687
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	19.4	0.8371

Compare expression of checked genes

Lus10010171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.