Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23310 359 / 1e-125 FSD3 Fe superoxide dismutase 3 (.1) AT5G51100 234 / 1e-75 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 212 / 2e-68 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5) AT3G10920 103 / 4e-26 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 94 / 2e-22 Iron/manganese superoxide dismutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017378 [exp] 480 / 9e-173 AT5G23310 368 / 5e-129 Fe superoxide dismutase 3 (.1) Lus10026881 [exp] 220 / 4e-70 AT5G51100 373 / 3e-130 Fe superoxide dismutase 2 (.1) Lus10034222 [exp] 95 / 7e-23 AT3G10920 370 / 2e-131 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10012883 [exp] 96 / 3e-22 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10030534 [exp] 49 / 2e-06 AT3G10920 241 / 8e-81 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089600 [exp] 347 / 9e-121 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.015G110400 [exp] 233 / 3e-75 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1) Potri.012G112301 [exp] 163 / 1e-49 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1) Potri.013G092600 [exp] 101 / 1e-25 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 94 / 2e-22 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10010174 pacid=23154247 polypeptide=Lus10010174 locus=Lus10010174.g ID=Lus10010174.BGIv1.0 annot-version=v1.0 ATGGGTTGCTGCAATGTCTTCGCACCCAGTTGCAACCTTCAGTTTCATGCCACTAATGACTCCTCACGCCGCCTCTTCGGTCTCAAAGCTCCATCCTTTA TGCTTCCTTCTCTGCCGCTGCAATTCTCGTTGTTTGGACTGATGGGGAGGTTTTCGGGTTTCCAGACTATGAAGAAGAAGAATCTGCAGCTGGATAGATG TCGGAGAGTCTCCAAGGTGGTAGCTTATTTTGGCTTGAAGCCTCCTCCTTATCAACTTGATGCTTTAGAGCCACATATGAGTAAGAAGACTGTGGAGTTG CATTGGGGAGCACATCACCGCGGTTATTTGGATAACCTGAATAATGCACTAGCTAAAGATGACATATTGTATGGATACACCATGGATGAACTTGTCAAAG TTACTTACAACAGAGGAAATCCTCTACCTGCATTCAACAATGCTGCTCAGGTCTGGAATCATGACTTCTTTTGGGAGTCCATGCAACCAGAAGCCGGCGG AATGCCTGAACTTGGTGTGCTTGATCAGATCGAAAAGGATTTCAGCTCCTTTACGAATTTCAGAGAGAAGTTTGTTGAAGCAGCTTTGACATCGTTTGGT TCTGGCTGGATCTGGCTTGTTTTGAAGAGAGAAGAGGCACGTCTTGAAATAGTGAAGACATCAAATGCTATCAATCCACTTGTGTGGGATGACTTTTGTA TACTGACGAAAATCGATCTCATCTTTTTCCCTGTGCCGCGCCAGCCTATTATCAATTTGGATATGTGGGAGCATGCTTACTATCTGGATCACAAGAATGA GAGAGCAACCTATGTCAATGCATTCATGGACCATCTGGTATCTTGGGATACAGCAATGGGAAGGATGGCCAGGGCGGAAGCATTTGTAAATTTGGGGGAA CCTACTATCCCAATCGCATAA
AA sequence Show only first row Show all	>Lus10010174 pacid=23154247 polypeptide=Lus10010174 locus=Lus10010174.g ID=Lus10010174.BGIv1.0 annot-version=v1.0 MGCCNVFAPSCNLQFHATNDSSRRLFGLKAPSFMLPSLPLQFSLFGLMGRFSGFQTMKKKNLQLDRCRRVSKVVAYFGLKPPPYQLDALEPHMSKKTVEL HWGAHHRGYLDNLNNALAKDDILYGYTMDELVKVTYNRGNPLPAFNNAAQVWNHDFFWESMQPEAGGMPELGVLDQIEKDFSSFTNFREKFVEAALTSFG SGWIWLVLKREEARLEIVKTSNAINPLVWDDFCILTKIDLIFFPVPRQPIINLDMWEHAYYLDHKNERATYVNAFMDHLVSWDTAMGRMARAEAFVNLGE PTIPIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	0	1
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	1.4	0.9530
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	2.2	0.9534
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	2.4	0.9497
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	3.5	0.9407
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10011493 [exp]	3.9	0.9308
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	4.5	0.9435
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	5.9	0.9427
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	6.8	0.9227
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	7.7	0.9192
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	7.9	0.9395

Compare expression of checked genes

Lus10010174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.