Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 223 / 4e-62 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017379 [exp] 750 / 0 AT1G05460 212 / 2e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010577 [exp] 130 / 2e-31 AT1G05460 610 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089800 [exp] 454 / 2e-150 AT1G05460 214 / 3e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G074070 [exp] 452 / 2e-150 AT1G05460 211 / 2e-57 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 223 / 1e-62 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 202 / 6e-55 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010175 pacid=23154202 polypeptide=Lus10010175 locus=Lus10010175.g ID=Lus10010175.BGIv1.0 annot-version=v1.0 ATGAATGGATTCATCAAGCTCATAGGGGCAATCGTAATTTCTAGCTGCTTAGGTTGGTGTTTCTTTCGCCGGAGAGGTGATGACCCCCCTTCTCGCCGGC GAAGGAGGTCCCCAAGCCCACCTCGTGCCTATAGTAGAAATGCACATGACAGCTACAACAACTACACAAAACCCTCACCCAATCAGCCTTCTAAGTATCC ATTGCCATCTTCTTCTAAGCAATTTTCATCTGCTGCTAAACAACCTGCTCCATGTACCTCCGAGGTTAAGTCGTCTCTAACTCACAGCTATAATTACACA AAACAACATTTGAATCAACCTTCTGTTCCAAGTCCAAAACCTTCACCAAATAAGCCTTCTGAGTATCGACCATCACTGTTACTGCCTCCAAATCCATCTC AATCCTCCCCACTTACACCTGAAACACCATCTTCTTCTTCATCTTCTAAGCATTTTTCATCTGCTGCTCCATATACCTCTGAGGTTAAGTCGTCCTTCAC TGTGAAGCCGACTCTACGTCTGGTTTCATCAAGTTCAACTGATAGGCAGACAAAAGCGGAATACATTTGGGCTGAGAAAGGCAAGTCGCCTGTTTATGAG GTTCCAGAGAACGTTGAATCTGAGATGGAGCAAGATAAGGTGCCTGAAGTACTGAGGAAACCTTTATCTGCGTCATCATACAAGAAGTTCTTTGCTGCTC TTTTGTATGCAGAGGACAGCTACCTCAAGAAATGGAGCGAGTTCCAGCTATTGAACGTGGCTTTAGAGTTGAAACACACAACAATTTACAAGAAAGATGA GAGCAGTAGTAAGAAGGTGGTGAAGAAGACCTTTGTGTCATTTGAGATCGATACAGTTCTGGAGAAGCGACCGTTCCTTCTGTCGAGGGACTTTGTCTTC GCACGACTTTCAGATGGAACAAGCAGCGGCCATGCGTTTCAGGGGCTAATCTATCGTGTGCAGCGCAGTACATCCGTGCTAGTTGAATTCGGCCAAGATT TTTTGTCACAGCATCAGCCAACTTTCAAGTACGACGTGAGCTTCTCATTCAACAGAGTCTGTCTGAAAAGGTTTCACCAGGCGATTGAAGTCGCTTCGGA CCGTTCATATTTAAGAGGCTTTATCTTCCCGGATTCCAAATCAGCTGGGAAGAGGTCCATGACAAGCACCGCTACCACACCACCTATACTGATCAGTCAT ATACTTGATAAGCATCAAAGGATGGCAGTCCACCGTATTCTAAACCTCCGGGGAGCTCCACCTTATCTAGTTGAAGGTTCCCCCTCAGTGAAAATTGATC AGAAGCCGAAACTATCAAGAACTGGAATGGTAGTCAAAGAGGCAGTCCTGCAACTTTACCAAAACTCGCGGAGTAATCGAATTCTGATATGCACACCACT GAACAAAACCTGTGATGCCCTGATAGAGAGTCTGAAAAAAATCATCAAGGATCATGAAATGTTCAGAGTGAATGCAGCATTCAGGGAATTCGAGGAGGTA CCTAGCGAAATCCTCAACTGGAGTGGTGCATATGAAGAGGAATGCTTCACATGCCGTCCTCTTCACGAGCTCAAGAAAATGAGAGTGATTGTTTCTACAT TTGTATCTAGCTTTCGGCTACATAGTGAGGGGATGCGCCCCGGGGATTTTAGTCATGTCTTTTTGGTGGATGCTTCGATGGTGATGGAGCCGGAAGTGAT GGTGGCTGTTGGCAACCTGGCGGACGAGAAGACTGCTGTGATAGTTACAGGTACTGGAGCAGCAAGGAGCCATAGTACTACACGTTCAGTTCGGTCTGAT ATTGGTAGGAAGTTTGGACTTGCGAAATCGTATTTCGAAAGACTTCGAAACAGCAGCGGGCTATTGTACCATTACTCTGATGATTCAGGGTTTATCAGTC GACTTGAGGAAGAGGAGTGTAAAGGACAACTACGGTTCTCAATATCGTATCTGAAGGCCGGAACAAGTGAAGTTGCTTTGTTTTGA
AA sequence Show only first row Show all	>Lus10010175 pacid=23154202 polypeptide=Lus10010175 locus=Lus10010175.g ID=Lus10010175.BGIv1.0 annot-version=v1.0 MNGFIKLIGAIVISSCLGWCFFRRRGDDPPSRRRRRSPSPPRAYSRNAHDSYNNYTKPSPNQPSKYPLPSSSKQFSSAAKQPAPCTSEVKSSLTHSYNYT KQHLNQPSVPSPKPSPNKPSEYRPSLLLPPNPSQSSPLTPETPSSSSSSKHFSSAAPYTSEVKSSFTVKPTLRLVSSSSTDRQTKAEYIWAEKGKSPVYE VPENVESEMEQDKVPEVLRKPLSASSYKKFFAALLYAEDSYLKKWSEFQLLNVALELKHTTIYKKDESSSKKVVKKTFVSFEIDTVLEKRPFLLSRDFVF ARLSDGTSSGHAFQGLIYRVQRSTSVLVEFGQDFLSQHQPTFKYDVSFSFNRVCLKRFHQAIEVASDRSYLRGFIFPDSKSAGKRSMTSTATTPPILISH ILDKHQRMAVHRILNLRGAPPYLVEGSPSVKIDQKPKLSRTGMVVKEAVLQLYQNSRSNRILICTPLNKTCDALIESLKKIIKDHEMFRVNAAFREFEEV PSEILNWSGAYEEECFTCRPLHELKKMRVIVSTFVSSFRLHSEGMRPGDFSHVFLVDASMVMEPEVMVAVGNLADEKTAVIVTGTGAARSHSTTRSVRSD IGRKFGLAKSYFERLRNSSGLLYHYSDDSGFISRLEEEECKGQLRFSISYLKAGTSEVALF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010175 [exp]	0	1
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	9.7	0.7681
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	26.6	0.7306
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	26.8	0.7142
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	28.8	0.5869
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	30.7	0.7470
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	33.5	0.7050
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	33.7	0.7448
AT2G39870			unknown protein		Lus10040247 [exp]	36.3	0.7501
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	36.7	0.7417
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	47.6	0.7185

Compare expression of checked genes

Lus10010175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.