Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23280 130 / 4e-36 TCP TCP7 TCP family transcription factor (.1) AT5G08330 120 / 1e-32 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT1G72010 103 / 3e-25 TCP TCP22 TCP family transcription factor (.1) AT3G47620 104 / 7e-25 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G69690 100 / 4e-24 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT1G35560 99 / 1e-23 TCP TCP23 TCP family transcription factor (.1) AT1G58100 100 / 2e-23 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT3G27010 97 / 7e-23 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT5G51910 96 / 8e-23 TCP TCP19 TCP family transcription factor (.1.2) AT2G45680 94 / 7e-22 TCP TCP9 TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037046 [exp] 94 / 7e-24 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 98 / 1e-23 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 97 / 1e-22 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037190 [exp] 96 / 4e-22 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10041328 [exp] 85 / 4e-19 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10013814 [exp] 81 / 8e-18 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008621 [exp] 69 / 3e-13 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 65 / 3e-12 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008444 [exp] 45 / 4e-06 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090300 [exp] 140 / 2e-39 AT5G23280 169 / 9e-52 TCP family transcription factor (.1) Potri.007G074028 [exp] 134 / 3e-37 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.013G110700 [exp] 105 / 2e-25 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.019G081800 [exp] 104 / 4e-25 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.011G055500 [exp] 102 / 1e-24 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 101 / 3e-24 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.017G068748 [exp] 98 / 3e-23 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 97 / 4e-23 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.004G222100 [exp] 99 / 5e-23 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2) Potri.001G060000 [exp] 97 / 5e-23 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10010177 pacid=23154231 polypeptide=Lus10010177 locus=Lus10010177.g ID=Lus10010177.BGIv1.0 annot-version=v1.0 ATGTCTAGCTCAGATGCAGCAGCAGCTCACAGTAACGGCGTCTCTAACGGCGGCTCCATGATGATCCACCACAGACAACAACAACAACAACAACAACAAC AACAACAGCTCATCCACCACCTTCCTCCTCCTTCTTCCCCTGTTCCCGCCGTTTCCGCCGCAGGTGGCAACGGCGGAAACGGCGTATTGACTGTAAAGAA GCCGCCTTCAAAGGACCGACACAGCAAAGTCGACGGCAGGGGAAGGAGAATCCGGATGCCGATCATCTGCGCCGCTAGGGTATTCCAGCTGACAAGAGAG CTGGGGCACAAATCCGACGGCCAGACAATCGAGTGGCTCCTCCGTCAGGCGGAGCCGTCTATCATTGCTGCCACGGGTACAGGTACAACTCCCGCTAGCT TCTCTACTGTATCCGCCTCTGTTCGCTCCTCTGCAGCTGCTCCGACTCTGGCTTCTTTTTCTAGCAATTCCATGGACCATAAGCCTTTGCTGGGGCCGGC TCCTTTCATCTTAGGCAAGAGGGTCAGGTCGGATGACGATAGCGCTAACAATGGAGGTGATAAAGACGACGGCGGTGGCGTTGGGGTTCCGGTGGGACAC TCTGTAGCTTCGTTAGTGGCTCCCACCCCCCTTAACGGGCCGGGGGGGGTTTGTGCGGGTCCGTGGATGGAGTGTGTTCNNNNNNNNNNNNNNNNNTGGG CGGGGGTGTTCCTACCCCCCCCCCGTTGGCGTTGGGCGCGCAGCGCCCCGCACTCTATGTCCACCAGCAGCAAGCTGCGGCGGGGGCGGCGCCCGCCGCT ATGGGGGAGGCATCAGCTGCCAGAGTCGGAAATTACCTTCCTGGCCACCTCAATTTGTTGGCGCAGTTATCAGGTGGGCAGGGTAATTCCAACCGGAGAG AGGAGGATCAACGTTGAATGGTCAGAGTCCTGA
AA sequence Show only first row Show all	>Lus10010177 pacid=23154231 polypeptide=Lus10010177 locus=Lus10010177.g ID=Lus10010177.BGIv1.0 annot-version=v1.0 MSSSDAAAAHSNGVSNGGSMMIHHRQQQQQQQQQQQLIHHLPPPSSPVPAVSAAGGNGGNGVLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRE LGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSASVRSSAAAPTLASFSSNSMDHKPLLGPAPFILGKRVRSDDDSANNGGDKDDGGGVGVPVGH SVASLVAPTPLNGPGGVCAGPWMECVXXXXXXWAGVFLPPPRWRWARSAPHSMSTSSKLRRGRRPPLWGRHQLPESEITFLATSICWRSYQVGRVIPTGE RRINVEWSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	0	1
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	1.4	0.8691
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	2.2	0.8505
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	2.8	0.8671
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	2.8	0.8551
AT1G74160			unknown protein		Lus10017857 [exp]	3.9	0.8616
					Lus10025143 [exp]	4.9	0.8144
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	8.8	0.8268
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	12.2	0.8312
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	13.0	0.8129
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	13.5	0.8105

Compare expression of checked genes

Lus10010177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.