Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08320 142 / 3e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017382 [exp] 203 / 8e-68 AT5G08320 145 / 5e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090400 [exp] 145 / 2e-45 AT5G08320 199 / 2e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10238 [flax] [poplar] Eapp_C E2F-associated phosphoprotein
Representative CDS sequence Show only first row Show all	>Lus10010178 pacid=23154208 polypeptide=Lus10010178 locus=Lus10010178.g ID=Lus10010178.BGIv1.0 annot-version=v1.0 ATGAAGCGCTCCGTTCCCAGTTCAGTGGCGTCCTCAGACGACGAGGACATAAACTACACCGCGAAGCCTGAATTCTACGACCCAAAGATCGACGAGAAAG ACGAAGCTTGGGCTGGAAAGCAGAGACGAGGGAACCGCCGCTCCGACGCCGTCCTCAGCTGCCCTTCCTGCTTCACCACTCTCTGCCTCCAATCCCAGAG GCATGAAACAAACGTAACACAGTACAGAGCAATCTTCGTAGTGAACTGCAATGTCAGCAGTGATAATATGCAACTGGATCAATCACCAGATGCCATTGCC AGCCATTCAAGCAGTGAAGCAGCAGGATGCTCATCAGTCAGCCAAGTCACCTGTGCAGTTTGCTCTGCACAAGTTGGAGTCTTGGACGACGAACAAGTCT ACCATTTCTTCGACGTCATCCCCAGTGAATCTTAA
AA sequence Show only first row Show all	>Lus10010178 pacid=23154208 polypeptide=Lus10010178 locus=Lus10010178.g ID=Lus10010178.BGIv1.0 annot-version=v1.0 MKRSVPSSVASSDDEDINYTAKPEFYDPKIDEKDEAWAGKQRRGNRRSDAVLSCPSCFTTLCLQSQRHETNVTQYRAIFVVNCNVSSDNMQLDQSPDAIA SHSSSEAAGCSSVSQVTCAVCSAQVGVLDDEQVYHFFDVIPSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08320			unknown protein		Lus10010178 [exp]	0	1
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	2.0	0.8657
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	5.5	0.8297
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	8.8	0.8198
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	9.8	0.7958
AT1G68730			Zim17-type zinc finger protein...		Lus10034401 [exp]	15.7	0.6704
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	18.1	0.8191
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	20.9	0.7781
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	21.0	0.7975
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	21.1	0.8062
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	22.3	0.8046

Compare expression of checked genes

Lus10010178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.