Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 255 / 2e-84 RING/U-box superfamily protein (.1) AT5G56340 150 / 5e-43 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 149 / 9e-43 RING/U-box superfamily protein (.1) AT3G56580 148 / 1e-42 RING/U-box superfamily protein (.1.2.3) AT3G13430 144 / 2e-41 RING/U-box superfamily protein (.1.2.3) AT2G40830 142 / 3e-40 RHC1A RING-H2 finger C1A (.1.2.3) AT4G26400 134 / 2e-37 RING/U-box superfamily protein (.1.2) AT1G60360 128 / 4e-35 RING/U-box superfamily protein (.1) AT3G46620 129 / 5e-35 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 127 / 2e-34 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017383 [exp] 150 / 5e-46 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10013397 [exp] 149 / 2e-42 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10013235 [exp] 147 / 2e-42 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 145 / 9e-42 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10002637 [exp] 145 / 1e-40 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 146 / 9e-40 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10040278 [exp] 128 / 8e-36 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 127 / 3e-34 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 119 / 6e-33 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090500 [exp] 232 / 7e-76 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 229 / 2e-74 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 230 / 3e-74 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 229 / 8e-74 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 146 / 3e-41 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 141 / 2e-40 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 139 / 2e-39 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.013G060500 [exp] 139 / 4e-39 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 139 / 5e-39 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 135 / 2e-37 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010179 pacid=23154199 polypeptide=Lus10010179 locus=Lus10010179.g ID=Lus10010179.BGIv1.0 annot-version=v1.0 ATGTCCTCATCCGCAGGGCCGCCGCTCCCCTTCTCTGACCCCTTCTCCGACCCCTTCTCCTCCATCCTCCCTCTACTCTTCTCCTCCTCCGCTGGTCATC CTAGCCTCGATTTCGGAAGCCCTAACATCTTCGGTGGCGGTCATCAGCCTGGTTCCCACCAGGGTCGATCTCCCGCCGATTTCAACCCCCTCGATTTCCT CCGCAACCACCTCGAGAATCTCCACTCCGATGGCGCTAGAATCCAGTTTGTTGTAGACGGCCATCCTTCCGAGCCTGGTGGTGGATTCCGCCTTCCTGCT AACCTCGGGGATTACTTCATCGGCCCTGGTCTCGAGCAATTGATCCAGCAGCTTGCTGAGAACGATCCTAACCGGTATGGAACTCCACCGGCGTCGAAAT CGGCAATTGATTCCTTGCCGACTATTAGAATCACGGATGACGACCTCAATTCCGAGATGAATCAGTGTGCTGTTTGTAAGGATGAGTTTGAGAAAGGTGC TGAAGCCAAACAGATGCCTTGTAAGCATCTCTACCATCGAGATTGTATTGTTCCGTGGCTTGAGTTGCATAATTCTTGCCCTGTTTGCCGGCTTGAATTG CCGACCGATGATACTGATTATGAGAATGCGAGGCGCAACGGTGGTGATCAGGGGAACAACCAAGGCCCTGACGCAGGAGGTCGGTCTGGGAGAAGCTTTA GTATTTCGTTGCCGTGGTCGTTCACCAGGCAGGGTGGTTCCAGCAGTGACGGTGGAGCTGGTGGTGGTCAAAGTAGTTCTTGA
AA sequence Show only first row Show all	>Lus10010179 pacid=23154199 polypeptide=Lus10010179 locus=Lus10010179.g ID=Lus10010179.BGIv1.0 annot-version=v1.0 MSSSAGPPLPFSDPFSDPFSSILPLLFSSSAGHPSLDFGSPNIFGGGHQPGSHQGRSPADFNPLDFLRNHLENLHSDGARIQFVVDGHPSEPGGGFRLPA NLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIDSLPTIRITDDDLNSEMNQCAVCKDEFEKGAEAKQMPCKHLYHRDCIVPWLELHNSCPVCRLEL PTDDTDYENARRNGGDQGNNQGPDAGGRSGRSFSISLPWSFTRQGGSSSDGGAGGGQSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19950			RING/U-box superfamily protein...		Lus10010179 [exp]	0	1
AT1G19140			unknown protein		Lus10027662 [exp]	2.0	0.7932
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	14.5	0.7803
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	16.4	0.7667
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	16.5	0.7876
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	19.0	0.7542
AT5G02420			unknown protein		Lus10038653 [exp]	19.7	0.7128
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	20.7	0.7640
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	21.6	0.7215
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	22.3	0.7586
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	24.7	0.7437

Compare expression of checked genes

Lus10010179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.