Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19920 39 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017384 [exp] 169 / 6e-51 AT3G19920 327 / 8e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073600 [exp] 62 / 4e-12 AT3G19920 119 / 9e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010180 pacid=23154233 polypeptide=Lus10010180 locus=Lus10010180.g ID=Lus10010180.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTGAGGGCAGGGATGGGACCGTTGGAAATGATGGAGTACTACAAGAAGAACATCTACTACAACAACAAGAAGGCGGCGGCGCCGGCGTCGA GCATGCTGAACGCTCTGTTCATGTCGACGGTCAACGCCGCCTCCAGAACTCTAGGCAACGTGGCGTCCAACATACAGCCTGACCACGGCGACAGGTGGAG GCCCACCGACCACCTCCGGTTCATGGTCATGCTCATGTCGTGGCTCACGGTCTGGGCCGTGAGGGTTCTTATGGATTTCTTGCCCGTGCCGTCAATCACG TGGTCCCCAGTCAGCCACCTCCTCTCCGCCGCCATTTCGCCCCTTAAGCTTGCCCTGCCGGCAGCTCCGGCAGTATTGGCGGTGTGTTGGCGGCGCCGTT TTCTTCGGCGGTGGCGGCTGGGAAGGTGA
AA sequence Show only first row Show all	>Lus10010180 pacid=23154233 polypeptide=Lus10010180 locus=Lus10010180.g ID=Lus10010180.BGIv1.0 annot-version=v1.0 MAAVRAGMGPLEMMEYYKKNIYYNNKKAAAPASSMLNALFMSTVNAASRTLGNVASNIQPDHGDRWRPTDHLRFMVMLMSWLTVWAVRVLMDFLPVPSIT WSPVSHLLSAAISPLKLALPAAPAVLAVCWRRRFLRRWRLGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19920			unknown protein		Lus10010180 [exp]	0	1
AT1G07175			unknown protein		Lus10018252 [exp]	2.4	0.8087
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	2.6	0.8379
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	3.5	0.8332
AT3G15280			unknown protein		Lus10005404 [exp]	6.0	0.8080
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	9.2	0.7751
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	11.6	0.7849
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	15.5	0.7434
					Lus10019810 [exp]	17.1	0.7806
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037984 [exp]	20.9	0.6662
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027324 [exp]	21.3	0.5781

Compare expression of checked genes

Lus10010180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.