Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19920 294 / 2e-97 unknown protein AT5G64230 148 / 1e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017384 [exp] 603 / 0 AT3G19920 327 / 8e-108 unknown protein Lus10010617 [exp] 153 / 4e-43 AT5G64230 294 / 3e-97 unknown protein Lus10033177 [exp] 152 / 8e-42 AT5G64230 296 / 2e-96 unknown protein Lus10033220 [exp] 44 / 9e-05 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10023030 [exp] 44 / 0.0001 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053200 [exp] 154 / 2e-43 AT5G64230 244 / 1e-77 unknown protein Potri.007G073600 [exp] 131 / 6e-36 AT3G19920 119 / 9e-31 unknown protein Potri.007G109300 [exp] 43 / 0.0003 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 42 / 0.0005 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010181 pacid=23154169 polypeptide=Lus10010181 locus=Lus10010181.g ID=Lus10010181.BGIv1.0 annot-version=v1.0 ATGGATGTTGTGTTGCAAGATGGGTACTTGGACGAGACTTCTCTTCACGCTATTGGAAGATCTCTCACCGACATCCTCGCATTGATGAACGAAATTCCAG CAACATCAAGGAAGTACCAATTCGCGATGACGATGGCTGACAGGATAATGGACGGGAACTTCCGCCACGGCCATCCTGAACTCGTCGAAATCAACCGCAT CGCGCTTTCCTCCTCCTTCGCCCGCACCTTAACCTTACTCTACCGGTCCATCCAAGAACCCACATTCAACCCGGACTCGACCGCTTCGTGGGCCGCCCGG GTCGTTAGTGCCTTCCCCATGGGGTCCTTAGCCGTCTCCACCGCCAGGGGGCTCAACTACTGCCTCACCACCTTCCTCCAGACCATCAGCAGCGGAGGGG GTGGGGCCGCGTGGACCGATAATAGACTTGCCCTACCCGGTGGGGTTACCCCCGGTGGTAGTGGGACTAGTAATATTGCTCATGGCAGGGAGGACGTGGT GTCGGAGAAGCTGGCGGAGGAGCTGCTTTGGATGACTAACAAGCTTAGGAAGTATGGGTTTGTCGAGGAGGCGTTGGTACAGTGGAGTCATGCGTCGGGG CTCGCGTCTATTGCGCTGTCCGGGAGCATTAGCCCCAGGGTCCAAGGCCTCATCCTCAAGACTTCAGCTGTACTGATTGGAGATCTAGGTGGAGGCCGGG AGGCGACACTGCAAGTGTCGGGGCAAGTGAAGTCGAGGCTCCTGATGGTGTGGCTGCCGGTGCTGTGCCACGCCAACAACGGGTTGGCTTACCCGGTGCT GTCGACGTTCGAGATGATGGAGGTGGAGAGAGCCATTGACGAGGTGATGACCACTCTCCCCGGGATGGACCAGGAAGTCATCCTGACGAACTGGATCCAC GACTACGCGATCACGTCCTCCGAGTGGCCGAATCTCCAATCCTCTTACGATCGTTGGTGCCAATCGACTCGTCAACTTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10010181 pacid=23154169 polypeptide=Lus10010181 locus=Lus10010181.g ID=Lus10010181.BGIv1.0 annot-version=v1.0 MDVVLQDGYLDETSLHAIGRSLTDILALMNEIPATSRKYQFAMTMADRIMDGNFRHGHPELVEINRIALSSSFARTLTLLYRSIQEPTFNPDSTASWAAR VVSAFPMGSLAVSTARGLNYCLTTFLQTISSGGGGAAWTDNRLALPGGVTPGGSGTSNIAHGREDVVSEKLAEELLWMTNKLRKYGFVEEALVQWSHASG LASIALSGSISPRVQGLILKTSAVLIGDLGGGREATLQVSGQVKSRLLMVWLPVLCHANNGLAYPVLSTFEMMEVERAIDEVMTTLPGMDQEVILTNWIH DYAITSSEWPNLQSSYDRWCQSTRQLAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19920			unknown protein		Lus10010181 [exp]	0	1
					Lus10037868 [exp]	5.8	0.8269
					Lus10001078 [exp]	8.5	0.8148
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	11.1	0.8070
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	12.2	0.7895
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	12.5	0.8026
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	14.8	0.7980
AT4G02160			unknown protein		Lus10010018 [exp]	19.8	0.7488
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	19.9	0.7656
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	21.0	0.7865
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	21.0	0.7870

Compare expression of checked genes

Lus10010181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.