Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19910 275 / 2e-90 RING/U-box superfamily protein (.1) AT3G63530 118 / 7e-31 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G47180 100 / 1e-24 RING/U-box superfamily protein (.1) AT3G15070 91 / 9e-20 RING/U-box superfamily protein (.1.2) AT5G52140 83 / 7e-18 RING/U-box superfamily protein (.1) AT1G53190 83 / 3e-17 RING/U-box superfamily protein (.1.2) AT5G42940 82 / 1e-16 RING/U-box superfamily protein (.1) AT4G31450 77 / 4e-15 RING/U-box superfamily protein (.1) AT1G45180 76 / 7e-15 RING/U-box superfamily protein (.1) AT5G67120 74 / 1e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017385 [exp] 494 / 4e-176 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10016416 [exp] 119 / 2e-31 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 119 / 3e-31 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 107 / 4e-27 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 95 / 2e-22 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 83 / 1e-18 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10029693 [exp] 84 / 4e-18 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10018140 [exp] 82 / 5e-18 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1) Lus10025691 [exp] 79 / 1e-16 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073200 [exp] 218 / 1e-68 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 218 / 2e-68 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 111 / 1e-28 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 110 / 2e-28 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.009G062100 [exp] 110 / 5e-28 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 108 / 1e-27 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 108 / 3e-27 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 101 / 8e-25 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 94 / 7e-21 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.012G136400 [exp] 87 / 8e-20 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010182 pacid=23154238 polypeptide=Lus10010182 locus=Lus10010182.g ID=Lus10010182.BGIv1.0 annot-version=v1.0 ATGGAGAACAATTGCAGCAGCACCAACACCAACACCATCGCCAAGCCAGGTGCTGAAGCAGAAACGAAGTCGAATGACAACACCACCACCGCCACCGTCA TCAGAGAACACGAGCAGACGCTTTCCAAGGAACCGCCTAATGTCTCAGCTCCCTTAATGAATGGAGAAGCAGCTCCCTTAACGAATGGAGAAGCAGCTTC TTTAACGAATGGAGTACAAGATGTTGATGACGAAGAAGAAGAAGAAGGAAGCGACATGGTGGACGACGACGAAGAGGAAGAAGAGGAGCTGGGGGATGCT CCTGCTCGCAACTCCCCAGCAAGAACTCCTTTCACTAATCTGAGTCAGATGGATGCTGACCTTGCTCTTGCCCGCACCCTCCAAGAGCAGGAAAGGGCAT ACATGATGTTAAGTCGCGTATCAATGAGCATGAATGAGGAGACTGATTGGGTAGGGGCAAGCTATGATGAAAACGATGATGATTTCGACGACCCTGATGA TGTCACAGATGAAGATGAGTTTGATGAGGAGGGATATGGTGAAAGTGAGGGTGAGGATGGTGTGGATGCATTCGATGTGCATGCTCATGCTAATGATGAA GATGATAACCATAACGATGACGGTCCTGACCTTGGAGATGATGCTGCTGCTTTTTCGAGTGATGAGGCTTATGCTAGAGCTTTACAGGATGCTGAAGAAA GAGAAATGGCTGCTAGACTATTTGCCCTGGCCGGGATAAATGAAAGGGGAGTTGAATTTGTTGAGCATCATGGTGGTCATTCTCAGGATACATGGGAGGA AGTTGATCCAGACGAACTTTCTTATGAGGAGCTACTTGCTCTGGGAGAAGTAGTTGGGACAGAAAGCAGAGGGCTCTCTGCGGATACAATTGCCAACCTC CCTAGTGTGATCTATAAAACTGGAAGCAATCAGAGCGGAACTAGCGATTCCTGCGTAGTATGCCGGTTGGATTTTGAGGATGAAGAGGCCGTCACGGTGC TCTCATGCAAACATTCATACCATGCAGAGTGCATCAACAATTGGTTGAAAATAAACAAGGTATGTCCTGTATGCAGTGCCGAAGTTTCGACATCTGGAGG GAGCCAGGCCTCGTCCTAG
AA sequence Show only first row Show all	>Lus10010182 pacid=23154238 polypeptide=Lus10010182 locus=Lus10010182.g ID=Lus10010182.BGIv1.0 annot-version=v1.0 MENNCSSTNTNTIAKPGAEAETKSNDNTTTATVIREHEQTLSKEPPNVSAPLMNGEAAPLTNGEAASLTNGVQDVDDEEEEEGSDMVDDDEEEEEELGDA PARNSPARTPFTNLSQMDADLALARTLQEQERAYMMLSRVSMSMNEETDWVGASYDENDDDFDDPDDVTDEDEFDEEGYGESEGEDGVDAFDVHAHANDE DDNHNDDGPDLGDDAAAFSSDEAYARALQDAEEREMAARLFALAGINERGVEFVEHHGGHSQDTWEEVDPDELSYEELLALGEVVGTESRGLSADTIANL PSVIYKTGSNQSGTSDSCVVCRLDFEDEEAVTVLSCKHSYHAECINNWLKINKVCPVCSAEVSTSGGSQASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	0	1
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	3.6	0.9185
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	4.7	0.9121
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	5.5	0.8982
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	7.7	0.8977
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	11.8	0.8958
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	12.8	0.8737
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10022761 [exp]	14.5	0.8679
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	15.2	0.8743
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	16.2	0.8580
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	18.3	0.8802

Compare expression of checked genes

Lus10010182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.