Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08305 531 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 357 / 8e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 343 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 325 / 4e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 321 / 5e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 320 / 3e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 311 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 305 / 1e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04750 306 / 6e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 307 / 9e-97 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017386 [exp] 709 / 0 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 386 / 5e-128 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 342 / 1e-110 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 339 / 1e-109 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 339 / 1e-109 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 333 / 4e-107 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 323 / 3e-105 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027389 [exp] 321 / 3e-104 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 313 / 3e-102 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073100 [exp] 630 / 0 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 384 / 2e-127 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 351 / 2e-114 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 347 / 3e-114 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 345 / 8e-112 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 336 / 1e-109 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.017G086100 [exp] 335 / 2e-109 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 332 / 4e-108 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G316500 [exp] 331 / 7e-106 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G231200 [exp] 326 / 4e-105 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010183 pacid=23154249 polypeptide=Lus10010183 locus=Lus10010183.g ID=Lus10010183.BGIv1.0 annot-version=v1.0 ATGTCTTCCCTGTCATGGAGAAATGGCGCCCAAATCCAGTCTCTCATTTCCATACTCCACAGCTGCAACACAACGCCACAGCTCAAGCAGATTCACGCTC TGATCATCACTCTGCGCATCTCCCAACTCGATTCCTTCGTCTCCAAAATCCTGTCTTCCCCTGAATCCACGAATCTGAACTACCTCGATTATTCCCGCCG GATTTTAACAAGCCTCCCCTTTCCGGCGCCGACCTACGGTTGGAATGCAGTCATAAGGAGCTACTCCAGCACCAAATTTCCCAACAGAGCACTTTCATCT TTCGTCCAAATGCTGCGCTCCGGAGCCACCCCTGACTATCTCACGTATCCTTTCCTTTTCAAAGCATGTTCGCGTCTTTTCTCGCTGAAGCTCGGCTTCT CAGTCCACGCACACACAACGAAGACTGGGTACGATTCCGATCGGTTTATAGCCAATTCCATGATCCATATGTACGCCTCCTGTAAGGATATAGACCATGC ACGCATGGTGTTCGATGAAATTCCCGTGAAGAATCTCGTCTCGTGGAACTCGATGGTGGATGGATACGCAAAGTGTGGAAACATAAGCCTTGCGCGTCAG GTATTTGATTTAATTCCGGAGAGAGATGTCGTCTCTTGGAGCTCCTTGATTGATGGATATGTTAAGGCAAAGGAATACAAAGAAGCCATGGTAATGTTTG AAAAGATGAAAGGGGATGATTCAGATTCAGGCGCTAGAGCCAACGAGGTGACGATGGTAAGCGTGTTGAGTGCTTGTGCTCATTTGGGTGAACTGGAAAA AGGCAGGTTGATGCATCAGTACATCTCAAACAACTATTTGCCGATGACTTTAGTTCTGAGGACTTCTCTTGTTGACATGTACGCCAAATGTGGAGCTGTG GAGGAAGCTTTTACGGTGTTTCGTGGCGTTCCTGTAGAGAAAGCTGACGTCTTTATATGGAATGCTATGATTGGCGGCCTTGCAACGCATGGATTGATTG AAGAATCGCTTGGTTTGTTTAGGGAGATGATGCAAACTGGCCGGATCAAGCCGGATGAGATCACTTACTTATGCCTGTTGACCACTTGTGCTCGTGGCGG GTTGGTCAACGAAGCATGGTACTTTTTTGAGTGTCTTGAGAAGCACGGCATGGCTGCTAAGAGCGAGCATTACGCTTGTATGGTTGATATGTTGGCTCGT GATGGTCAGGTAACGGAGGCTTACGAATTGGTAATTAACCGAATGCCGATGGAGCCAACTGCTTCAATGCTGGGAGCTCTGTTCAACGGGTGCATGAGCC ACAAAAGACTCGACCTTGCTGAGATAGTTGGAAGGAAGCTGATCGAGATTCAGCCCGATAACGACGGTAGATATGTCGGGCTGTCGAATGTTTACGCAGA GGTGAGGCGGTGGGATCAGTGCAGAAACACCAGAGAAGAAATGGAAAAGAAAGGGGTCAAGAAAACTCCTGGGTACAGTCTCGTTCTTTAA
AA sequence Show only first row Show all	>Lus10010183 pacid=23154249 polypeptide=Lus10010183 locus=Lus10010183.g ID=Lus10010183.BGIv1.0 annot-version=v1.0 MSSLSWRNGAQIQSLISILHSCNTTPQLKQIHALIITLRISQLDSFVSKILSSPESTNLNYLDYSRRILTSLPFPAPTYGWNAVIRSYSSTKFPNRALSS FVQMLRSGATPDYLTYPFLFKACSRLFSLKLGFSVHAHTTKTGYDSDRFIANSMIHMYASCKDIDHARMVFDEIPVKNLVSWNSMVDGYAKCGNISLARQ VFDLIPERDVVSWSSLIDGYVKAKEYKEAMVMFEKMKGDDSDSGARANEVTMVSVLSACAHLGELEKGRLMHQYISNNYLPMTLVLRTSLVDMYAKCGAV EEAFTVFRGVPVEKADVFIWNAMIGGLATHGLIEESLGLFREMMQTGRIKPDEITYLCLLTTCARGGLVNEAWYFFECLEKHGMAAKSEHYACMVDMLAR DGQVTEAYELVINRMPMEPTASMLGALFNGCMSHKRLDLAEIVGRKLIEIQPDNDGRYVGLSNVYAEVRRWDQCRNTREEMEKKGVKKTPGYSLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	2.4	0.8409
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	2.8	0.8018
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	3.5	0.8382
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	4.5	0.8196
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	4.9	0.8278
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	5.5	0.8284
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	6.0	0.7712
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	9.0	0.7985
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	9.2	0.8105
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017387 [exp]	10.7	0.7338

Compare expression of checked genes

Lus10010183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.