Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 347 / 5e-121 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 346 / 9e-121 Succinyl-CoA ligase, alpha subunit (.1.2) AT3G06650 82 / 7e-18 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 81 / 2e-17 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010187 [exp] 381 / 2e-134 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 381 / 3e-134 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 372 / 1e-130 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 198 / 2e-62 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 118 / 1e-32 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10028767 [exp] 112 / 2e-32 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10017337 [exp] 112 / 5e-31 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10017331 [exp] 92 / 1e-22 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10037770 [exp] 84 / 2e-18 AT5G49460 1118 / 0.0 ATP citrate lyase subunit B 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 357 / 4e-125 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 333 / 2e-115 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 332 / 3e-115 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 85 / 6e-19 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 79 / 5e-17 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10010185 pacid=23154175 polypeptide=Lus10010185 locus=Lus10010185.g ID=Lus10010185.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACGCATCAGTGATCTATGGTCCTCCACCTTTTGCTGCTGCTGCTATTATGGATGCTCTGGAAGCTGAATTGGACCTAGTTGTTTGTATCA CTGAAGGAATTCCTCAGCATGACATGGTCCGTGTGAAGGCTGCCCTGAACCAGCAATCGAAAACAAGATTAATCGGTCCAAATTGCCCTGGGCTCATCAA ACCTGGGGAATGCAAGATTGGGTTCATGCCTGGATACATCCACAAACCAGGGCGTACTGGAATTGTTTCACGGTCTGGCACATTGACTTACGAGGCCGTT TTCCAAACAACTGCTTCTGGTCTTGGACAATCCACCTGCGTAGGAATTGGCGGTGATCCTTTCAACGGGACGACTTTCATTGACTGCATGGAGGAGTTCC TAGCAGACCCTCAGACAGAAGGCATCGTTCTTATTGGTGAGATTGGAGGTACTGCAGAAGAAGATGCCGCTGCTCTAATAAAGGCAAGCAAGACCGAGAA GCCTATTGTTGCGTCCATCGCTGGACTGACTGCTCCATCTGGACGCCATATGGGGCATGCCGGAGACAAGATCAGGACACTGAAGGAAGCTGGGGTGACC GTAGTTGAATCTCCGGCGAAGATCAGTACCGCCATGTTCAGCGTGTTCAAGGAAAGAGGTCTGGTCAATTGA
AA sequence Show only first row Show all	>Lus10010185 pacid=23154175 polypeptide=Lus10010185 locus=Lus10010185.g ID=Lus10010185.BGIv1.0 annot-version=v1.0 MEANASVIYGPPPFAAAAIMDALEAELDLVVCITEGIPQHDMVRVKAALNQQSKTRLIGPNCPGLIKPGECKIGFMPGYIHKPGRTGIVSRSGTLTYEAV FQTTASGLGQSTCVGIGGDPFNGTTFIDCMEEFLADPQTEGIVLIGEIGGTAEEDAAALIKASKTEKPIVASIAGLTAPSGRHMGHAGDKIRTLKEAGVT VVESPAKISTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	0	1
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	1.4	0.9165
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	3.0	0.8117
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	4.0	0.7725
					Lus10027352 [exp]	5.5	0.7901
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	5.7	0.8231
AT3G17740			unknown protein		Lus10031899 [exp]	6.0	0.7920
AT2G40070			unknown protein		Lus10004390 [exp]	6.6	0.7140
AT5G27260			unknown protein		Lus10035759 [exp]	9.8	0.7359
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	10.2	0.7821
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	10.5	0.7628

Compare expression of checked genes

Lus10010185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.