Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 531 / 0 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 529 / 0 Succinyl-CoA ligase, alpha subunit (.1.2) AT3G06650 96 / 2e-21 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 94 / 7e-21 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017389 [exp] 609 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 568 / 0 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 382 / 1e-134 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 379 / 3e-131 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 198 / 3e-62 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10017331 [exp] 166 / 1e-49 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 130 / 8e-37 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10028767 [exp] 116 / 1e-32 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10010186 [exp] 109 / 1e-29 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 527 / 0 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 515 / 0 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 514 / 0 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 99 / 2e-22 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 92 / 7e-21 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10010187 pacid=23154222 polypeptide=Lus10010187 locus=Lus10010187.g ID=Lus10010187.BGIv1.0 annot-version=v1.0 ATGGCTCGTCAAGCCACCAGACTCGTGGCGTCTTTGTCTTCCAAGCTGTGCCCTCCCACTCCCCAGATCACTCCGCTCTCCTCCCAAACTTTGTCGCAAT CGCGGTCCTTCGCCTCCGCTCCGCCGCCGCCTCCGGCGGTGTTCGTCGACAAGAATACCCGCGTCGTTTGCCAGGGAATCACCGGCAAAAACGGGACCTT TCACACCGAACAAGCCATTGAATATGGCACCAAAATGGTTGGAGGGGTGACACCTAAAAAGGGTGGCACGGAACACTTGGGCCTTCCTGTCTTCAACTCC GTCGCGGAAGCAAAAGCTGAAACGAAAGCTAATGCATCAGTGATCTATGTCCCTCCACCTTTTGCCGCTGCTGCTATTATGGAGGCTTTGGAAGCTGAAT TAGACCTAGTTGTTTGTATCACTGAAGGAATTCCTCAGCATGACATGGTCCGTGTGAAGGCTGCCCTGAACCAGCAATCGAAAACAAGATTAATTGGTCC AAATTGCCCTGGGATCATCAAACCTGGGGAATGCAAGATTGGAATCATGCCTGGATACATCCACAAACCAGGGCGTATTGGAATTGTTTCACGGTCTGGC ACATTGACTTATGAGGCTGTTTTCCAAACAACAGCAGTTGGTCTTGGACAATCCACCTGCGTAGGAATTGGCGGTGATCCTTTCAATGGGACCAATTTTG TTGACTGCATGGAGAAGTTCCTAGAAGACCCTCAGACTGAAGGCATCGTTCTTATCGGTGAGATCGGAGGTACTGCAGAAGAAGATGCTGCTGCTCTAAT AAAGGCAAGCAAGACTGAGAAGCCTATTGTTGCCTTCATCGCCGGACTGACTGCTCCACCTGGACGTCGTATGGGGCATGCTGGAGCTATCGTCTCTGGC GGGAAGGGCACTGCACAAGACAAGATCAGGACACTGAAGGAAGCTGGGGTGACCGTAGTTGAATCTCCGGCGAAGATCGGTACCGCCATGTTCAGTGTGT TCAAGGAAAGGGGTCTGGTCAATTGA
AA sequence Show only first row Show all	>Lus10010187 pacid=23154222 polypeptide=Lus10010187 locus=Lus10010187.g ID=Lus10010187.BGIv1.0 annot-version=v1.0 MARQATRLVASLSSKLCPPTPQITPLSSQTLSQSRSFASAPPPPPAVFVDKNTRVVCQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNS VAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVRVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSG TLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCMEKFLEDPQTEGIVLIGEIGGTAEEDAAALIKASKTEKPIVAFIAGLTAPPGRRMGHAGAIVSG GKGTAQDKIRTLKEAGVTVVESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010187 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	6.9	0.8877
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	7.3	0.9078
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	8.4	0.9174
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	16.9	0.9099
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	18.5	0.8904
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	18.7	0.8935
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	25.4	0.8812
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10001906 [exp]	26.5	0.8891
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	27.1	0.8908
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	29.5	0.8922

Compare expression of checked genes

Lus10010187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.