Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08290 293 / 4e-104 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT3G24730 93 / 9e-25 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017390 [exp] 294 / 3e-104 AT5G08290 290 / 1e-102 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10022811 [exp] 97 / 1e-26 AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10011878 [exp] 94 / 4e-25 AT3G24730 258 / 1e-89 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010189 [exp] 87 / 6e-23 AT5G08290 87 / 4e-23 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072700 [exp] 289 / 1e-102 AT5G08290 293 / 5e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Potri.001G287600 [exp] 79 / 2e-19 AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02966 [flax] [poplar] DIM1 Mitosis protein DIM1
Representative CDS sequence Show only first row Show all	>Lus10010188 pacid=23154201 polypeptide=Lus10010188 locus=Lus10010188.g ID=Lus10010188.BGIv1.0 annot-version=v1.0 ATGTCGTACTTGCTGCCGCACTTACACTCGGGATGGGCTGTCGATCAGTCCATCCTTGCCGAAGAAGAGCGTCTTGTGGTCATCCGATTCGGCCACGATT GGGATGAAACCTGTATGCAGATGGATGAAGTGCTGGCAGGAGTTGCTGATACACTAAAGAACTTTGCAGTGATCTACTTGGTGGATATCACAGAGGTGCC TGATTTCAACACAATGTACGAGCTGTACGATCCATCGACTGTCATGTTCTTCTTCAGGAACAAGCATATCATGATTGATCTAGGAACTGGAAACAACAAC AAGATCAACTGGGCTCTCAAGGACAAACAGGAGTTTATCGACATTGTCGAGACAGTTTACCGCGGTGCTAGGAAGGGACGTGGTCTGGTTATCGCTCCTA AAGACTACTCAACCAAGTACCGGTACTAG
AA sequence Show only first row Show all	>Lus10010188 pacid=23154201 polypeptide=Lus10010188 locus=Lus10010188.g ID=Lus10010188.BGIv1.0 annot-version=v1.0 MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLAGVADTLKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	0	1
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	1.4	0.8999
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	4.2	0.8624
AT4G28240			Wound-responsive family protei...		Lus10018535 [exp]	4.8	0.8500
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	4.9	0.8669
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	5.7	0.8736
AT3G29280			unknown protein		Lus10018197 [exp]	6.2	0.8370
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	6.9	0.8627
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	7.3	0.8751
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	7.4	0.8675
AT4G35750			SEC14 cytosolic factor family ...		Lus10021230 [exp]	7.4	0.8274

Compare expression of checked genes

Lus10010188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.