Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 647 / 0 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 489 / 1e-170 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 471 / 6e-164 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 457 / 1e-158 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT4G15100 450 / 3e-155 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G61130 449 / 5e-155 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G02110 444 / 5e-153 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24010 442 / 8e-153 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G17180 443 / 9e-153 SCPL33 serine carboxypeptidase-like 33 (.1) AT1G11080 441 / 1e-151 SCPL31 serine carboxypeptidase-like 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017391 [exp] 929 / 0 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 477 / 1e-165 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 475 / 8e-165 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 462 / 6e-160 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 458 / 2e-158 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 448 / 3e-154 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10011213 [exp] 445 / 2e-153 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10023505 [exp] 437 / 2e-150 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10018467 [exp] 437 / 2e-150 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091700 [exp] 686 / 0 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091800 [exp] 569 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 513 / 3e-180 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 473 / 1e-164 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 457 / 1e-158 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G261100 [exp] 453 / 4e-156 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.004G120100 [exp] 447 / 2e-154 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 444 / 3e-153 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.011G046600 [exp] 441 / 8e-152 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.009G055900 [exp] 441 / 1e-151 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10010190 pacid=23154211 polypeptide=Lus10010190 locus=Lus10010190.g ID=Lus10010190.BGIv1.0 annot-version=v1.0 ATGGCAGTGCTATTTCTGGCCGTATCGGTATCGGTTGCGGCCGATGCGGCGGTTCAGAAAGGGAACTGGAAAACAGAGCAAGAAGGAGACAGAGTGACGA GGCTGCCGGGGCAGCCGGAAATGAAGTTCAAGCAGTACGCTGGGTACGTTACTGTCAATGAAACTCACGGCCGAGCACTGTTCTATTGGTTCTTTGAAGC TACTCATGAACCTCAACGCAAGCCGCTCCTCCTCTGGCTCAACGGAGGGCCAGGATGCTCGTCGATTGGTTATGGCGAGGCCGAAGAGTTGGGACCTTTT TTCCCGACGAGGGGGAAGCCTGAGCTCGCCTCCAACCCTCATTCTTGGAACAAAGCTGCAAATCTGTTGTTCCTTGAATCCCCGGTCGGAGTTGGATATT CCTACACCAATACTACCAAGGACATCTCTCAACTCGGCGACGGTATAGCAGCCAAGGACGCGTACATATTCCTCGTGAATTGGTTCCGAAGATTCCCTCA GTTCCGGTCCCACGACTTCTACATCGCCGGAGAAAGCTATGCTGGACACTACGTGCCACAACTAGCGGAGGCCGTGTACGAGGGGAACAAGAACGCTTCG AAGGACGACCAAATCAACCTCAAGGGCTTGATCATCGGGAACGCGCTGCTGGACGACGAGACGGATCAGGAGGGGATGGTGCAGTATGCATGGGACCACG CGGTGATATCGGACAGAGTGTACAATGACGTGAAACGTTCGTGCAACTTCAGCCTCGACCAAGCGGGTTCAGCCTGCAACTTTGCCTTGCAGGAGTACTT CAATGTGTACAAGCTCATCGACATGTACAGCCTCTATGCTCCGAGGTGCTTCAATGGCTCTTTCTCCTCGAGTACTGGACACCGGCAGCGACCACGTCCC TTTATTCAGGGGAATGTATCCCCTCGCTTATTCTCCAAGTTCGAGGCGTGGCACAACAAGGCTCCGGCGGGGTACGATCCGTGCATATCGACCGTGACGG AGGAATACTTCAACAGGAAAGATGTGCAGGAAGCTCTCCACGCTAATGTCAGCGGGAAGATTCCGTACACGTGGACCCACTGCAGCGACGTAATCCAGCA ATGGGGCGACGCTCCCCATTCGATTCTCCCCGTCGTTAAGAAGCTCATCGCCGGCGGCCTCCGCGTCTGGGTCTTCAGTGGGGATACGGATGGGAGAATT CCAGTTACATCGACTCGGTTAACCCTGAACAAGCTCGGTCTCAACACAACTCAGGAGTGGGCTCCATGGTATCTCAAACGCCAGGTGGGAGGATGGACGA TCGAGTACGATGGGTTGACATTCGTGACGATCAGAGGAGCGGGACACCAAGTTCCGACGTTTAAGCCACGGCATGCTTTGGTGCTGATCAGGCGCTTCTT AGCAAACAAGAAAATGCCTTACTCCCCTTGGCCCTCAACCAAATCTTCTTAG
AA sequence Show only first row Show all	>Lus10010190 pacid=23154211 polypeptide=Lus10010190 locus=Lus10010190.g ID=Lus10010190.BGIv1.0 annot-version=v1.0 MAVLFLAVSVSVAADAAVQKGNWKTEQEGDRVTRLPGQPEMKFKQYAGYVTVNETHGRALFYWFFEATHEPQRKPLLLWLNGGPGCSSIGYGEAEELGPF FPTRGKPELASNPHSWNKAANLLFLESPVGVGYSYTNTTKDISQLGDGIAAKDAYIFLVNWFRRFPQFRSHDFYIAGESYAGHYVPQLAEAVYEGNKNAS KDDQINLKGLIIGNALLDDETDQEGMVQYAWDHAVISDRVYNDVKRSCNFSLDQAGSACNFALQEYFNVYKLIDMYSLYAPRCFNGSFSSSTGHRQRPRP FIQGNVSPRLFSKFEAWHNKAPAGYDPCISTVTEEYFNRKDVQEALHANVSGKIPYTWTHCSDVIQQWGDAPHSILPVVKKLIAGGLRVWVFSGDTDGRI PVTSTRLTLNKLGLNTTQEWAPWYLKRQVGGWTIEYDGLTFVTIRGAGHQVPTFKPRHALVLIRRFLANKKMPYSPWPSTKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	4.9	0.9280
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	4.9	0.9039
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	5.8	0.9164
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	7.1	0.8741
AT4G28290			unknown protein		Lus10031644 [exp]	8.0	0.8694
AT1G74875			unknown protein		Lus10023768 [exp]	12.0	0.8493
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	12.7	0.8711
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	14.6	0.8860
AT5G59400			unknown protein		Lus10016531 [exp]	17.4	0.8433
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	18.2	0.8390

Compare expression of checked genes

Lus10010190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.