Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 477 / 9e-166 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 429 / 2e-147 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 422 / 1e-144 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G11080 418 / 1e-142 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G15100 418 / 1e-142 SCPL30 serine carboxypeptidase-like 30 (.1) AT2G24000 416 / 2e-142 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 415 / 1e-141 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G61130 409 / 3e-139 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G24010 407 / 5e-139 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G17180 401 / 4e-136 SCPL33 serine carboxypeptidase-like 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017392 [exp] 943 / 0 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 467 / 6e-162 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 463 / 2e-160 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 418 / 9e-143 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 416 / 6e-142 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10019954 [exp] 408 / 1e-138 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 404 / 8e-137 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 400 / 3e-135 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 394 / 1e-133 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091800 [exp] 536 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091700 [exp] 501 / 4e-175 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 459 / 6e-159 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 431 / 3e-148 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 428 / 6e-147 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 422 / 1e-144 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.011G046600 [exp] 422 / 1e-144 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G037800 [exp] 422 / 2e-144 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G120100 [exp] 418 / 4e-143 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.001G261100 [exp] 411 / 8e-140 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10010191 pacid=23154219 polypeptide=Lus10010191 locus=Lus10010191.g ID=Lus10010191.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCAGGTGCAAGGATGTTATCTCTGTGCCTGCTTCTGTGCTTGGTGGGTGTATCACCATCATGGGGAGCAATTGATTCGGAGACCATTGCAG CTCAATCTGCAGACCGGGTGGTGTACATTCCAGAACAGCCTTCTGTTAACTTCCTGCAGTATTCTGGTTATATCACGGTAGATGAGAGCTACGGGAAGGC GCTGTTCTATTGGTTCTTCGAGGCAGCTCACAAGCCGGAAGACAAACCTCTGCTCATCTGGCTCAATGGAGGGCCCGGATGTTCTTCCGTCGGGTATGGA GCAGCACAAGAAATCGGACCGTTTTTGGTGAAGGAAGGACATGATATACAACTCAACCCCTACGCTTGGAACAAAGGCAATTCCTTTTGGTTTTCCTCTG CCAACTTATTGTTCTTGGAATCTCCGGCCGGTGTTGGCTTTTCGTACTCGAACAACACTTACGTTCCAGGGGACACTGTCACAGCTTGGGATTCATACAC ATTCGTGAACAAGTGGTTGAAGAGATTCCCGCAGTTCAGAACCAATGAATTGTTTATAGCAGGGGAAAGCTACGCCGGGCACTATGCACCTCAACTTGCT GAAGTTATCTTTGATCAAAACAAGATATTTTACTCCCTCAATGACTCTTCTAACTACATCAACCTCAAAGGATTCATGGTTGGGAACCCATCACTGGACG AGGAATCCGACCGGAAAGGGATGATCGACTACGCATGGGGACACGCAATGCTGTCGGATAAAGATTACCAGTCCATCTTGTCAAACTGCGACTTCACAAA ACCCGACTCGAACCAGACCGACCAGTGTGCAACCGCAGCGGCCAATTACAACCGACTGTACTCAACCATAGACATGTACAGCCTCGACTCTCCTACGTGC CATCAGTTCAGCAATTCCAGCCATGGCTTCCGTAGTCAACAGCCCAACTCCACATTTAAGATACCCGCTGGAGGCGGGTCCGGGTACGATGCATGCACCA GCAACTACGTTTTCGAGTATTTCAACCAACCGGCCGTGCAGGAAGCATTGCATGCGAATGTCACCAAACTCTCTCGCCCTTGGGACCTTTGCAGTGATGC GGTGAACAATGAGTGGAACGAAAGTGCGTTCTCGGTGCTTCCTGTGATTAGGAAGCTGCTTGATGGAGGCCTTCGCATTTGGTTCTACAGCGGAGATGCA GATGCTAGGATACCAGTGACATCAACGAGGTACAGTCTGAACAAGCTTGGACTAAACATCACCCAAGATTGGACTCCTTGGTACCACAAAGACGAGGTAG GAGGATGGACGATAAAGTACGAGGGAGGGTTGACAATGGCGACGGTGAGAGGAGCTGGTCATGCAGTCCCTGTACTGGCACCCGACAGTGCTCTCCTTCT CGTATCTCGTTTCCTCGACAACATCGACTTGCCTCGATCCTAG
AA sequence Show only first row Show all	>Lus10010191 pacid=23154219 polypeptide=Lus10010191 locus=Lus10010191.g ID=Lus10010191.BGIv1.0 annot-version=v1.0 MGVSGARMLSLCLLLCLVGVSPSWGAIDSETIAAQSADRVVYIPEQPSVNFLQYSGYITVDESYGKALFYWFFEAAHKPEDKPLLIWLNGGPGCSSVGYG AAQEIGPFLVKEGHDIQLNPYAWNKGNSFWFSSANLLFLESPAGVGFSYSNNTYVPGDTVTAWDSYTFVNKWLKRFPQFRTNELFIAGESYAGHYAPQLA EVIFDQNKIFYSLNDSSNYINLKGFMVGNPSLDEESDRKGMIDYAWGHAMLSDKDYQSILSNCDFTKPDSNQTDQCATAAANYNRLYSTIDMYSLDSPTC HQFSNSSHGFRSQQPNSTFKIPAGGGSGYDACTSNYVFEYFNQPAVQEALHANVTKLSRPWDLCSDAVNNEWNESAFSVLPVIRKLLDGGLRIWFYSGDA DARIPVTSTRYSLNKLGLNITQDWTPWYHKDEVGGWTIKYEGGLTMATVRGAGHAVPVLAPDSALLLVSRFLDNIDLPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010191 [exp]	0	1
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017392 [exp]	1.0	0.8474
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10004114 [exp]	5.7	0.7880
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	6.9	0.7430
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	6.9	0.7748
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	16.7	0.7508
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	17.4	0.7515
AT5G16610			unknown protein		Lus10010975 [exp]	17.9	0.7437
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	18.6	0.7842
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	18.6	0.7738
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	19.1	0.7703

Compare expression of checked genes

Lus10010191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.