Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23200 558 / 0 unknown protein AT5G08270 451 / 1e-158 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017393 [exp] 813 / 0 AT5G23200 558 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092000 [exp] 581 / 0 AT5G23200 544 / 0.0 unknown protein Potri.005G092100 [exp] 442 / 2e-155 AT5G23200 396 / 5e-137 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010192 pacid=23154181 polypeptide=Lus10010192 locus=Lus10010192.g ID=Lus10010192.BGIv1.0 annot-version=v1.0 ATGGCGTATCTCTTCAACAAATTCTATGCGGGGGTAAAAGTTCTAGCGAAGAGCCCTACGTTCGCTAGGGATCCAAGGAAAATGCAATTTGAAGCGGACA TCAATCGTCTCTTCCTCTATACATGCTACAATCGCTTAGGTAGGACTGCTGAAGAGGCTGACGTGGATGAGGTCATTGAAATGGCGAACAAAGCTTCTGT TGATGATCAGCAGAAGCAAGTACAGGAGAACATCCATTATCAGATTAAAAAATTCTCTACGGTTATGGATGACATTCTTCTTCCTGATGCTACTCAAGGT GATGAAGCAGGTGGAATGGCCACACAAGCAGATGTGCCACCTCGCCGTAGTGGCCTTAGTTTAGCTGTTGGCCAGAAGGGACCATCTGCTAATCGTAAAG CGATTCCCGAGACGAAACCGTTGAAGCTTTCTGATGTCTCATTGAGAGTAAAGGAGAGTATTGGATACACGCTTGATCTTAAACCATCTCAGATACCTCA CGAGGAAGCTGGAACCGGATTGTTTGTGAATGGTGAGGCTGATGTTGGCAGTGTCATTGCGTTCTACCCTGGAGTTATTTATGCCCCTGCTTACTACCGG TTTATCCCTGGGTATCCGAGAGTTGATGCACAGAACCCTTACTTGATCACGAGGTATGACGGAACGGTGATCAATGCTAAGCCGTGGGGTCCTGGTGGTG AAATGCGTGAACTATGGAATGGGTCAAAAGTTCTGGAAAGTCAGCCTAGCTTAGAGAGCAATGAGAAAGGAGCAGATCGCTTGTGGAAAAAGCTCAGTAA GCCTGTGGAAGGGGCACGCTTTAGTGCTGTTGGTGAAATTCTTGAGAGAAGGAATCCACTGGCTTTTGCTCATTTTGCAAACCACCCTGCAAAGGATATG GTTCCTAATGTCATGATCTGCCCTTATGACTTCCCGCTGACTGAGAAGGAGATGAGGGCTTATGTACCCAATATTTCATTTGGGAATCCAGAAAAAGTAA GTATGAGAAGATTCGGAAGTTTTTGGTGGAGAACCGGGTCAAAAGACGATGGTTCTGATGTTCCCACTCTAAAGGGACTTGTCTTGGTGGCGACCAGGGC CCTCTGTGATGAAGAAGTTATGTTGAACTATAGATTAAGCAACACAAAGCGCAGACCAGCATGGTACACTCCAGTGGATGAAGAGGAAGACCGGAGGAGA TGGAGTTAA
AA sequence Show only first row Show all	>Lus10010192 pacid=23154181 polypeptide=Lus10010192 locus=Lus10010192.g ID=Lus10010192.BGIv1.0 annot-version=v1.0 MAYLFNKFYAGVKVLAKSPTFARDPRKMQFEADINRLFLYTCYNRLGRTAEEADVDEVIEMANKASVDDQQKQVQENIHYQIKKFSTVMDDILLPDATQG DEAGGMATQADVPPRRSGLSLAVGQKGPSANRKAIPETKPLKLSDVSLRVKESIGYTLDLKPSQIPHEEAGTGLFVNGEADVGSVIAFYPGVIYAPAYYR FIPGYPRVDAQNPYLITRYDGTVINAKPWGPGGEMRELWNGSKVLESQPSLESNEKGADRLWKKLSKPVEGARFSAVGEILERRNPLAFAHFANHPAKDM VPNVMICPYDFPLTEKEMRAYVPNISFGNPEKVSMRRFGSFWWRTGSKDDGSDVPTLKGLVLVATRALCDEEVMLNYRLSNTKRRPAWYTPVDEEEDRRR WS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23200			unknown protein		Lus10010192 [exp]	0	1
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	3.9	0.8182
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	4.2	0.8553
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	6.2	0.8243
AT3G49990			unknown protein		Lus10015447 [exp]	6.6	0.8233
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	8.2	0.7898
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	12.0	0.8031
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	12.1	0.8413
AT1G03270			CBS domain-containing protein ...		Lus10028010 [exp]	15.3	0.6997
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	15.4	0.7282
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	15.6	0.7862

Compare expression of checked genes

Lus10010192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.