Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23160 69 / 5e-13 unknown protein AT5G08240 69 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017395 [exp] 265 / 1e-87 AT5G23160 83 / 6e-19 unknown protein Lus10040984 [exp] 103 / 9e-25 AT5G08240 89 / 2e-20 unknown protein Lus10013437 [exp] 101 / 4e-24 AT5G23160 82 / 5e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092400 [exp] 80 / 2e-16 AT5G08240 100 / 9e-25 unknown protein Potri.007G071900 [exp] 70 / 3e-13 AT5G08240 92 / 2e-21 unknown protein Potri.019G119000 [exp] 49 / 2e-06 AT5G08240 52 / 1e-07 unknown protein Potri.013G149300 [exp] 48 / 4e-06 AT5G23160 56 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010194 pacid=23154182 polypeptide=Lus10010194 locus=Lus10010194.g ID=Lus10010194.BGIv1.0 annot-version=v1.0 ATGGCCATTCCCCAAGTCCCAACCGTTTCACCAAATATGGCCGGCAACAAACCCAATCTTCTAACCAATCCTAAACCACCCGCCACCACCGCCACCGTCT CCTTCCGCGGATTTTTCGGTTGCTCCGACGGAAACTCCGTCGCCATCATCAAAGTCGCAGCTACCGATCCTCCCCGCAAGATCAACAAGACCAAGAAGAA GAAGACGCCTAATTGGTTTTCTAATTGGTCTACCAAAAAGCCCCTCTCCGCCGCCGACGACTCCTCCTCGTCTCCGGCTGAGGAAACCGAAGCCGGTGGT CATCAGCCTACTAGTAAAAGAGATGACGGTAATACAAAATCGTCGTCGGCTTTCCCCACCAAGTCAAAGTTTGTGATCAAGTGGACTAAAAAAAATCGGC ATAGTGGTACTACTCCGGCCGTTACTACTACCGTCGACACCGCAGACGTAACGGTTTCCTCTGCGGCTGCCGCCAGCGAAGTCCCTACATCACATGGAGC AGCCGGCGGGGGATCAATCCCCAAAGAGACAATTACGACCGGCTCACCGGAAGAGGACAACACAGTCGTCGGCAGCCGGAACACTTCGGGGCATACGGAG GAGAACTCACCAAATCGAGCCACGTGTAAAAAGCTGTTTCCGTTCCGCCGGATAAGAGCCGAACTCAACTCCACATCAGCAAATACCGGGTCAAGTATGA GCCAGCCTGGCACACCCGTACCGAAAAAACCCAATCCGAACGGCACCGTTCCGATTTCCCGGTCAACCACATTCCCCAGGCCGGAACATCTCGGCCGGCA ATCGGTTCAGCTACTTCAACCAACGATCGTCGATAATAATAAAAAGAAGCCGGCAGCGGCGGCCGTAAATGATGAGAGGAAATTGGACTCGGTGGTGGGG CTGTCGATTATAACGGTGACGTTGGTGATCATGGTGGTTTGGGGTCGGTTCTGTGCCATTGTTTGCACGGCCGCTTGGTTGTATTTTATTCCGCGTTTAA GGACGACTCTGTCCGCCGCCGATCAGGTCAAAGTCAAGGCTGACCGTGGCAGGATGATGACTACGACTGAGTCATGTGAATCGGGCGGTGGTTCGGGTCG AGCAACCGATTTGGATTCGGTTGAATACAAGAGAAGAGTGGTGTTGGAAGGTCTTCTCGAAAGGAAGCGTCGCCTCCTTGCTTGA
AA sequence Show only first row Show all	>Lus10010194 pacid=23154182 polypeptide=Lus10010194 locus=Lus10010194.g ID=Lus10010194.BGIv1.0 annot-version=v1.0 MAIPQVPTVSPNMAGNKPNLLTNPKPPATTATVSFRGFFGCSDGNSVAIIKVAATDPPRKINKTKKKKTPNWFSNWSTKKPLSAADDSSSSPAEETEAGG HQPTSKRDDGNTKSSSAFPTKSKFVIKWTKKNRHSGTTPAVTTTVDTADVTVSSAAAASEVPTSHGAAGGGSIPKETITTGSPEEDNTVVGSRNTSGHTE ENSPNRATCKKLFPFRRIRAELNSTSANTGSSMSQPGTPVPKKPNPNGTVPISRSTTFPRPEHLGRQSVQLLQPTIVDNNKKKPAAAAVNDERKLDSVVG LSIITVTLVIMVVWGRFCAIVCTAAWLYFIPRLRTTLSAADQVKVKADRGRMMTTTESCESGGGSGRATDLDSVEYKRRVVLEGLLERKRRLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23160			unknown protein		Lus10010194 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	1.0	0.9619
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	1.7	0.9565
					Lus10012067 [exp]	2.4	0.9514
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	4.0	0.9604
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	5.1	0.9306
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	7.7	0.9520
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	8.0	0.9531
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	11.2	0.9485
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	11.7	0.9333
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	12.6	0.9413

Compare expression of checked genes

Lus10010194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.