Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08200 253 / 3e-79 peptidoglycan-binding LysM domain-containing protein (.1) AT5G23130 228 / 6e-70 Peptidoglycan-binding LysM domain-containing protein (.1) AT1G55000 45 / 4e-05 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017399 [exp] 437 / 5e-153 AT5G08200 227 / 4e-72 peptidoglycan-binding LysM domain-containing protein (.1) Lus10040979 [exp] 374 / 3e-127 AT5G08200 257 / 1e-82 peptidoglycan-binding LysM domain-containing protein (.1) Lus10013432 [exp] 362 / 2e-122 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1) Lus10004477 [exp] 48 / 7e-06 AT1G55000 327 / 5e-114 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10029925 [exp] 47 / 2e-05 AT1G55000 320 / 1e-111 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071500 [exp] 256 / 2e-80 AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G092800 [exp] 256 / 2e-80 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.012G036600 [exp] 221 / 9e-68 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.013G021600 [exp] 44 / 0.0002 AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.005G032100 [exp] 40 / 0.0007 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010198 pacid=23154220 polypeptide=Lus10010198 locus=Lus10010198.g ID=Lus10010198.BGIv1.0 annot-version=v1.0 ATGGGTTTTCCTTCGTACAGACTTGTCCCAACTAGTATGACCTTTGATAGGTCACATTGGCTATTCAAATCCCAGCTTAGTGCTTTTGGTGTAAATTTAA TGGGTGGATATTACGGAGACAACAAAGCTACTGCTTTTCAAGCTATTACAAAGGAGCACTCATTTTGTGCCGAGCTGAGCTCCGGATTTCTTGAAGGTGA ATCAATCCGCATTTGCAGCTCCGATTCCCCATGTTTCCAACTGTGCCGATCTGTTTTGATTTCGATATCTGTCGTCCACAGCTGGGAATCTAGATGCCAC ATCCAATCGGTGAAGATCTTCCAGGGAAAGCGAAAGGAATCTCTCTCCGTTCTATTGGATTTGGGGATGCAGATGGAGAGGGACGGTGGGAGGGAAATGA TGGATTACGGTAACCGTAGATACAATCAATACACCAATGATTATTGCGATAGGCAGCAGAACGGTGAAGATTTGGGGTTCGATGATTACAATCGCGGCTT TTTCAACAATGGAGATGCGACTACGCCTCTTAAGCTCAACGGTGGTGGCGGGGCGTCCACCACCAACTCGTCGCCGACGACCTCGCCGGTATCCCGTGCC CGTGGATTCATTGAGCACCACGTTTCGAAGTTCGATACCCTCGCCGGTGTGGCCATCAAGTACGGTGTTGAGGTGGCCGACGTAAAAAAGAGGAATGGTC TCATTACTGATCATCAAATGTTTGCCCTGAAGACACTCAAGATTCCTCTACCTGGGAGGCATCCTCCATCACCGTGTTTGTCGAATGGTTCTGAATCCGC AGGTGGGAGCAACTGTGAACGTACACCTAATCCGCTTGATTCATTCCAATCCTTGAGGCCGAAGTCATCATCCGGACATAAAGTCTCTCCTGCAATGAGC TCTTTACAGGGCTTCTATGGCCTTACTCCTGCCGATCGAAGACAAAGCTTGAATCTTTCTCCAGATTCCAACCCTCCTTTAACCCACCACCGGAAGTCCA GAAGCTACGTCAACGTTTTCCAAGTCGAGAAGGATGGAACCGACAGTGACTCAATAGTAAGAAGGCGTCAGAAATCAGAAGTTGACTTCCCAAATATGCT GATGAGAGAAGAAAACAGCAACGGAGGAGGCAAGGTATCACTAACAGGTAAAGGGTTAGCTCTAAGACCGAAATCAGCAAATCGCAGCGGGTTAATATCA GACCCAGACTCAGCAGCAGCTAGCGTGAGCCCGAATACAGTGGATCCCGATGCGGTGGTTGATCCCGTCTCGGCTGTGAGGAAGTCGTCAAGCACATCGA GCTTGAACGACACAGATGGCGGTGGAAGCGGCGGCTCCTTCACATGGCCGACACCAAAATGGAGTCTGAAGGCGGATTTGCAGGCACTTTCAGCTGCAGC CATATCAAGGCCTATCTTTGATGGACTGCCTAAGCCACTGAGTGGGTGGCGAAACAAGTCAGCAGTTGACTGA
AA sequence Show only first row Show all	>Lus10010198 pacid=23154220 polypeptide=Lus10010198 locus=Lus10010198.g ID=Lus10010198.BGIv1.0 annot-version=v1.0 MGFPSYRLVPTSMTFDRSHWLFKSQLSAFGVNLMGGYYGDNKATAFQAITKEHSFCAELSSGFLEGESIRICSSDSPCFQLCRSVLISISVVHSWESRCH IQSVKIFQGKRKESLSVLLDLGMQMERDGGREMMDYGNRRYNQYTNDYCDRQQNGEDLGFDDYNRGFFNNGDATTPLKLNGGGGASTTNSSPTTSPVSRA RGFIEHHVSKFDTLAGVAIKYGVEVADVKKRNGLITDHQMFALKTLKIPLPGRHPPSPCLSNGSESAGGSNCERTPNPLDSFQSLRPKSSSGHKVSPAMS SLQGFYGLTPADRRQSLNLSPDSNPPLTHHRKSRSYVNVFQVEKDGTDSDSIVRRRQKSEVDFPNMLMREENSNGGGKVSLTGKGLALRPKSANRSGLIS DPDSAAASVSPNTVDPDAVVDPVSAVRKSSSTSSLNDTDGGGSGGSFTWPTPKWSLKADLQALSAAAISRPIFDGLPKPLSGWRNKSAVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	0	1
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	2.6	0.8366
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	7.2	0.8013
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	7.4	0.8052
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	8.2	0.8272
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	8.7	0.8270
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	9.7	0.8364
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	13.5	0.8274
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	18.0	0.7823
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	19.1	0.8257
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	19.8	0.8171

Compare expression of checked genes

Lus10010198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.