Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 730 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 692 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 671 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 670 / 0 EFR EF-TU receptor (.1) AT3G47110 665 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 473 / 2e-150 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 443 / 2e-137 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 427 / 1e-130 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 413 / 1e-127 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 416 / 1e-126 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 901 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 877 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 869 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 866 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 865 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 852 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 848 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 844 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020140 [exp] 844 / 0 AT3G47570 740 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 923 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 918 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 907 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 885 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 872 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 868 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 862 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 860 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 856 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 855 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010199 pacid=23154196 polypeptide=Lus10010199 locus=Lus10010199.g ID=Lus10010199.BGIv1.0 annot-version=v1.0 ATGGCGCCAAAATCCTCCTCTGTTTCTCTTCATTTCCTTCTTCTGCTACTCTGTTTTTTATCATCCAGCCTTTTCCCGGCGGCGTCCGCCGCCGGAAGCA ATGAAACCGACAGACAAGCATTGCTGCAACTGAAATCAACACTAATTGACCCACTTGGAGCTTTAAATTCATGGAACCAAACACTCCACTTCTGCCAATG GCGAGGCGTCTTCTGTAACAACAACAGCCAAAGAGTCATCCAAATCAACCTCCAGCTCAGCCAACTCAGCGGCACAATCTCTCCACATATCGGAAACTTG ACCTTCCTCACTCACATAATCCTCAACAATAACACAATCTCCGGCGAAATCCCTCCCGAAATCGGCCGCCTCGAATCCCTCCAGGAGCTCGTCCTTGTTC AGAATTCTCTTTCAGGAACTATCCCACCCGAAATATCATCATGTTCCAATCTGACCAGCTTGCGAATCGGATACAATACCATCTCCGGCGAAATCCCGTC GGAGTTATGCAAGCTGAAGAACCTGAAACTGCTCTCGATTCATTTCAATAACCTGACTGGAAACTTCCCTTCTTGTTTTGGAAATGTTTCGTCGCTAGAG GCGATTTCCGCCCCCAGGAACAGGTTTGTCGGTCCGATACCAGAGTCTTTGGCTCGGTTGAGAAATCTAAAGATCATGTCTTTTGGTTCGAACCGGTTTT CGGGTGTTTTCCCGCTTCAATTCTTTAACTCCTCTTCTATTCAGATCATCAGTGTGATAGAGAATCAGCTGACAGGAACAATTCCTACAGATTTTGGGCT GACCCTTCCGAATCTAGTCCATCTCAACTTGGCATTCAACAATTTCTCTGGTCGAATTCCGGACTCCATCTCCAACGCGACAAACCTTCAGGTATTCGAG TTGGGAAACAACAATTTCCACGGCAAGGTCCCGTCTTTGGCGAACCTGAACAGGCTTCAACTTCTGGGGCTGATCAACAACAGCTTCGGAAGCGATGACG GGGATGATCTGATGTTCCTTGATTCTCTAACGAACAGCACCTTCCTCCAAGTCGTAAACGTCGGGATGAACAATTTCGCAGGTGTTTTGCCTCTCAGCAT AAGCAATTACTCCACAACTTTCGTCAGGATGTCGTTACGATTAATGAGCGGGGTCACCGGAACCCTTCCGCCAGGGCTTGACAGGCTTGTCAACTTGGAG CAGCTGGATTTCAACGGCAACAGTCTTTCAGGCCATCTCCCTAATGAATTGGGAAAGATACCAAAGTTGATGACTTTGCAGGTTCAGAACAACAACCTGT CAGGAACTATCCCATCCGATATCGGCAACTCGACGAAGTTGCTTTCGATTTGGTTGCAAGGTAATCATCTTGAAGGCAGCATTCCTTCAAGCTTTGGGAA TTGCAAAGGAATGACATATCTGAATCTAGCAGACAACAATCTCAGCGGTGCCGTACCACCGGAGATATTCAACCTCCCAGATCTGTCTTTCATTCTGAAC CTGTCCAGGAACAGTCTGAGCGGCCAGATTCCTGACGAAGTTGGCAACTTGATCAATCTCGGTCGGTTAGATCTCAGCAATAACTTGCTGTCAGGGAGGA TTCCAGCCAGTTTGGGGAAATGCGTGAGATTGGAGACCTTGAACTTGATGGGAAACTCTCTTCAAGGCTCGATTCCTTCGTCTCTAAGGGCACTCAGAGG GTTAGTAGTTATGGACCTTTCTCGAAACAACTTGTCCGGAGAAGTACCGGACTTTCTTGAGGAGATTACTTCATTGGTGAGACTGAACTTGTCATACAAC AACCTCGAAGGTGCGTTGTTAACGCAGGGAATCTTGGGGAATGCTACTGCGACATTGGTTATGGGGAACAATGCGCTATGTGGCGGAATGCCTGAGTTTG GATTGCCAAAATGTCGCGTTGAAGGTTCGAAGAAAGGCAGTCTGAGTACCGTTGTGAAGATTATAATCTCGGTTGTATGTGGTCTCCTCGGTCTGACTTT TCTTCTTTCATTCATCTACTTCTGCTTCCTGAGGAAGAAATTGAAAGACCCTGAAAAAGTTTCGAGCTTTACTGGGAATGCTCTTCTGGAGGCGACGTAT CATCATCTGCTTAAAGCGACAGACGGTTTTTCGTCTGCTAATTTACTCGGGGTAGGTAGCTTCGGCTCTGTATACCGAGGGCTCATAGTCACAGATGATG ACGTCAGCGGCACAAAGATGGTTGCTGTCAAGGTACTGAACCTTCAAAATGCCAGAGCTTCCAAGAGCTTTGTAGCTGAATGCGAGGTGCTGAAGAACAT TAGACACCGGAATCTTGTCAAGTTATTGACTGTATGTTCAGGAATCGACTACCAGGGCAACGATTTCAAGGCCCTGGTGTACGATTTCATGGTTAACGGG AGCTTAGAGGAGTGGCTTCATCCCCAAGTTAACCCTGAAGAAGAAGAAGCTTCAACAACAAGGAAGCTAACTCTAACTCTTCTCCAAAGGTTGAACATAG CCATCGACGTTGGCAGTGGTTTGGATTATCTCCATAACAACAGCGGAATACCGGTGGTGCATTGTGACCTCAAGCCCAGCAACATCCTTCTCGATGTCAA TATGGTCGGACATATCGGTGATTTCGGCTTGGCAAAGTTCCTTCCGGAAGCAGCACCAGCAGCAAACTCCTCCATTGGTGTGAGAGGAACAGTTGGCTAT AGCGCCCCGGAGTATGGAATGGGAAGTGAGGTTTCGAGAAGTGGAGATGTGTACAGCTACGGGATTTTGTTACTGGAGATGTTTACCGGCAGAAGACCTA CCAACGAAACATTCAGAGACGGTTTGAATCTGCATAACTTTGCTGCAGAAGGCTTGCCGGATAAAGCAGAAGAGATTCTGGATCCGGTTTTGCTGTCGGA GAAGCAAGAAGGAAGGATGCCAGATCAGCAAGTACTTGCAGAGGCTTTGGTTTCGATAATACGAGTAGGAGTTGATTGTTCTAATGAAATTCCAAGAGAA AGAATGAGCATTAGTGATGCTTCTGCTAAGCTAACAGCAGTCAGAGATAAACTTGTCAGCAGAACGCACGGAAGACGTCCCTTCGAGGGACCAGAATCGG AATCGTCAGCTTCAAGTTGA
AA sequence Show only first row Show all	>Lus10010199 pacid=23154196 polypeptide=Lus10010199 locus=Lus10010199.g ID=Lus10010199.BGIv1.0 annot-version=v1.0 MAPKSSSVSLHFLLLLLCFLSSSLFPAASAAGSNETDRQALLQLKSTLIDPLGALNSWNQTLHFCQWRGVFCNNNSQRVIQINLQLSQLSGTISPHIGNL TFLTHIILNNNTISGEIPPEIGRLESLQELVLVQNSLSGTIPPEISSCSNLTSLRIGYNTISGEIPSELCKLKNLKLLSIHFNNLTGNFPSCFGNVSSLE AISAPRNRFVGPIPESLARLRNLKIMSFGSNRFSGVFPLQFFNSSSIQIISVIENQLTGTIPTDFGLTLPNLVHLNLAFNNFSGRIPDSISNATNLQVFE LGNNNFHGKVPSLANLNRLQLLGLINNSFGSDDGDDLMFLDSLTNSTFLQVVNVGMNNFAGVLPLSISNYSTTFVRMSLRLMSGVTGTLPPGLDRLVNLE QLDFNGNSLSGHLPNELGKIPKLMTLQVQNNNLSGTIPSDIGNSTKLLSIWLQGNHLEGSIPSSFGNCKGMTYLNLADNNLSGAVPPEIFNLPDLSFILN LSRNSLSGQIPDEVGNLINLGRLDLSNNLLSGRIPASLGKCVRLETLNLMGNSLQGSIPSSLRALRGLVVMDLSRNNLSGEVPDFLEEITSLVRLNLSYN NLEGALLTQGILGNATATLVMGNNALCGGMPEFGLPKCRVEGSKKGSLSTVVKIIISVVCGLLGLTFLLSFIYFCFLRKKLKDPEKVSSFTGNALLEATY HHLLKATDGFSSANLLGVGSFGSVYRGLIVTDDDVSGTKMVAVKVLNLQNARASKSFVAECEVLKNIRHRNLVKLLTVCSGIDYQGNDFKALVYDFMVNG SLEEWLHPQVNPEEEEASTTRKLTLTLLQRLNIAIDVGSGLDYLHNNSGIPVVHCDLKPSNILLDVNMVGHIGDFGLAKFLPEAAPAANSSIGVRGTVGY SAPEYGMGSEVSRSGDVYSYGILLLEMFTGRRPTNETFRDGLNLHNFAAEGLPDKAEEILDPVLLSEKQEGRMPDQQVLAEALVSIIRVGVDCSNEIPRE RMSISDASAKLTAVRDKLVSRTHGRRPFEGPESESSASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	0	1
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	2.4	0.9293
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	4.9	0.9181
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	5.6	0.9362
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	6.2	0.8894
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	6.2	0.9288
AT2G43590			Chitinase family protein (.1)		Lus10024368 [exp]	10.2	0.8919
AT4G35680			Arabidopsis protein of unknown...		Lus10041833 [exp]	10.5	0.8584
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006460 [exp]	12.0	0.9106
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031107 [exp]	12.2	0.9075
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	13.0	0.9255

Compare expression of checked genes

Lus10010199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.