Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23120 528 / 0 HCF136 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017401 [exp] 708 / 0 AT5G23120 563 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071300 [exp] 554 / 0 AT5G23120 565 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1) Potri.005G092950 [exp] 61 / 1e-11 AT5G23120 87 / 9e-22 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010200 pacid=23154237 polypeptide=Lus10010200 locus=Lus10010200.g ID=Lus10010200.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCCTTACTTCTCCCTTCACCACCACAAACTCCTCTCTCCCCATCAGACCCAATTCCCAAACTACCCAGCCTTCTCACCGTTGCCAGCTGC TCACTCCCAGAGCCTGCCTCAACGAATCCCACGACAACAAAATCCAGTTGAGCCGGCGCCAATTCATTTCCCAATCCGCTGCCGTCGTAGCTGCTCCTCT CGCTCTCTCCGATCGGATTTCGGCTGCATCCGCCGAGGAAGCGCTTTCCCAGTGGGAAAGAGCGTATCTTCCTATCGACCCTGGCGTCGTCCTCCTCGAC ATTGCATTTGTCCCCGATGATCCTAAACACGGTTTTGTATTGGGAACCAGGCAGACACTTCTGGAGACGAAAGACGGGGGAGGGAGTTGGTTCCCAAGAT CCATAGCTTCAGCTGAGGAAGAGGATTTCAATTACAGGTTTAATTCGATTAGTTTCAAAGGGAAAGAAGGATGGATTATTGGGAAGCCTGCGATTTTGTT GTACACGGCGGATGCTGGCGATACCTGGCAGAGGATACCACTGAGTGCTCAGCTCCCCGGTGACATGGTGGGGGTGTACATTAAAGCAACTGGAGACAAA AGTGCTGAGATGGTGACTGATGAAGGTGCTATCTATATTACTTCGAATAAGGGCTATAACTGGAAGGCTGCAGTTCAGGAGACTGTTTCAGCTACACTCA ACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGTTACTATACTGGTACGTTCAATACTGTTAACCGTTCCCCAGAAGGAAGGTATGTTGCTGTCTCGAG CCGTGGTAACTTCTATATGACATGGGAGCCTGGTCAAGCATTCTGGCAGCCACATAATAGAGCGGTCGCAAGAAGGATTCAGAATATGGGGTGGAGAGCT GATGGGGGTCTTTGGCTTCTCGTGCGAGGAGGTGGACTTTATCTCAGCAAGGGAACCGGGATAACAGAGGATTTTGAAGAAGTCCCTGTGCAAAGTCGAG GTTTTGGCATTCTTGATGTTGGCTACCGCTCTCAGGAAGAGGCCTGGGCAGCAGGAGGCAGTGGGGTTTTGTTGAGAACCACAAACGGAGGCAAGTCGTG GATTCGAGACAAAGCAGCCGACAATATTGCTGCAAATCTCTACTCAGTGAAGTGA
AA sequence Show only first row Show all	>Lus10010200 pacid=23154237 polypeptide=Lus10010200 locus=Lus10010200.g ID=Lus10010200.BGIv1.0 annot-version=v1.0 MAASLTSPFTTTNSSLPIRPNSQTTQPSHRCQLLTPRACLNESHDNKIQLSRRQFISQSAAVVAAPLALSDRISAASAEEALSQWERAYLPIDPGVVLLD IAFVPDDPKHGFVLGTRQTLLETKDGGGSWFPRSIASAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGDTWQRIPLSAQLPGDMVGVYIKATGDK SAEMVTDEGAIYITSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPEGRYVAVSSRGNFYMTWEPGQAFWQPHNRAVARRIQNMGWRA DGGLWLLVRGGGLYLSKGTGITEDFEEVPVQSRGFGILDVGYRSQEEAWAAGGSGVLLRTTNGGKSWIRDKAADNIAANLYSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	0	1
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	1.0	0.9537
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	3.2	0.9535
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	4.6	0.9508
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	6.3	0.9385
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	7.3	0.9181
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	9.8	0.9302
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	11.0	0.9312
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	11.5	0.9104
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	11.7	0.8852
AT3G25805			unknown protein		Lus10022435 [exp]	12.1	0.9242

Compare expression of checked genes

Lus10010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.