Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48930 808 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G64390 619 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 596 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 571 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT2G44550 490 / 9e-169 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 489 / 2e-168 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44570 480 / 6e-165 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 466 / 2e-159 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT4G23560 414 / 3e-139 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G70710 411 / 7e-138 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017402 [exp] 1134 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10001833 [exp] 618 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 610 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 609 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 550 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10035316 [exp] 528 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10033957 [exp] 518 / 2e-179 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10008208 [exp] 428 / 4e-144 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 417 / 8e-140 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071200 [exp] 951 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G092200 [exp] 618 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 617 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 592 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 555 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G098800 [exp] 425 / 7e-143 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.006G219700 [exp] 415 / 2e-139 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.001G083200 [exp] 411 / 8e-138 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 412 / 9e-138 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 409 / 8e-137 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0203 [flax] [poplar] CBD PF09478 [flax] [poplar] CBM49 Carbohydrate binding domain CBM49 CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10010201 pacid=23154224 polypeptide=Lus10010201 locus=Lus10010201.g ID=Lus10010201.BGIv1.0 annot-version=v1.0 ATGAAGAACAAGTTCAACATTAGTCCTTCTGCAGCTGCTGCAATATGCAACTTGCTCCTATGCAGCCACATGGTACTCGGCCTAGCGCAAGGGCTCGACT ATGGCGATGCACTCGACAAGACATTTCTGTTCCTCGAGGCTCAGAGGTCCGGGAAGCTCCCCCTCACTGATCAGAGGGTCAAGTGGAGGGGTGATTCCGG CCTACGTGATGGTCATCTCCAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCAGGGGACCACGTCAAGTTTGGTCTGCCAATGGCATTCAGTGTCACA ATGATGGCTTGGGGAGCCGTCGATTTCGAGAAAGATATCGTATTGACCGACCAGATGGGGAACACTTTACGAGCCATTCGATGGGGAACCGACTACTTCC TCAAGGCACATACTCAGCCTAATGTTCTCTGGGCTCAGGTTGGAGATGGCGATTCGGACCACTACTGCTGGGAGCGAGCAGAGGACATGACGACTTCCCG AACAAGCTACAAGCTCGATCAGAACAATCCCGGTTCCGACCTAGCTGGAGAAACCGCTGCTGCCTTAGCAGCATCTGCCTTGGCTTTCAAGCCATACAAT TCTTCCTACTCCAATCTCCTTCTGGCCCACGCCAAGCAGCTATTCTCCTTCGCCGATAGGTTTCGAGGTTTATACGACGATAGCATCCAGAACGCCAAGC AATTCTATACTTCCTCTGGCTACTCGGATGAGTTGCTGTGGGCTGCCACTTGGCTTTACCGCGCGACAAGTGACGAGTACTACCTCAAATATTGTGCAGA CAACGCAGTCTACATGGGCGGAACCGGTTGGGCTGTTAAGGAATTCTCTTGGGATAACAAGTATGCTGGTGTTCAGATCCTTCTATCTAAGATACTTCTA GAAGGACGAGGTGGGCAGTACACGCAGACCCTGAAGCAATACCAAGCGAAAGCGGACTACTTCGCGTGCGCTTGCGTACAGAAGAACGATGGCTACAACA TCCACAAGACTCCGGGCGGGCTAATGTACGTTAGAGAATGGAACAACATGCAGTATGTCTCGGCCGCTGCATTTCTCACAGCAGTCTACTCGCAGTATCT AACCGCTTCAAATGCCAAGCTTACTTGCCCAAGGGGCCAGCTAGTTGAGCCTCGGGAGCTTCTCGGATTCGCCAAGTCTCAGGCCGATTACATCCTGGGA AAGAACCCCAAGTCGATAAGCTACATGGTTGGGTATGGACAGCAGTATCCGATCCACGTCCACCATAGGGGCGCCTCCATTGCCTCGATCTTCCTTCTCC GTTCCTCGGTTGAGTGTGTCCAGGGGTTCGAGACTTGGTACCGTAAGGCTGATGCGAATCCCAATGTGGTTTACGGTGCTTTGGTGGGAGGACCTGATCA GAACGACAACTTCTCCGATCAGCGTGCTAACTATGAGCAGACTGAGCCTACACTTACTGCCAGCGCTCCCCTTATTGGTCTCTTCTCCAAGCTGCAAAGT GCATCAGGAAATCGAGGCTACCAACCTAAAGCATCACCTGTTACACATTACACGAAACCGACACCAGCACCGAAAACAGTTACAGGAAGCCATGTTCCTC TTGCGTTTCTACATTCAATAACCCAATCATGGACGGTTGGAACCACAACATATTACAGACACAAGGTGACGATCAAAAACATGTCTCAGAAGCCAATTAC TAGCATCAAATTGGTGGCACAAAACCTATTAGGTTCTATTTGGGGTCTTACACCGGCACCGGAAAAGGACACCTATGTGCTGCCTGAATGGGTCAAGGTG CTGCAACCGGGGTCGGAGATTAACTTCGTGTATGTGCAGGGTGGTCCGCAAGCCAAGTTCAGCGTTCTAAGCTACCAATAA
AA sequence Show only first row Show all	>Lus10010201 pacid=23154224 polypeptide=Lus10010201 locus=Lus10010201.g ID=Lus10010201.BGIv1.0 annot-version=v1.0 MKNKFNISPSAAAAICNLLLCSHMVLGLAQGLDYGDALDKTFLFLEAQRSGKLPLTDQRVKWRGDSGLRDGHLQGVDLVGGYYDAGDHVKFGLPMAFSVT MMAWGAVDFEKDIVLTDQMGNTLRAIRWGTDYFLKAHTQPNVLWAQVGDGDSDHYCWERAEDMTTSRTSYKLDQNNPGSDLAGETAAALAASALAFKPYN SSYSNLLLAHAKQLFSFADRFRGLYDDSIQNAKQFYTSSGYSDELLWAATWLYRATSDEYYLKYCADNAVYMGGTGWAVKEFSWDNKYAGVQILLSKILL EGRGGQYTQTLKQYQAKADYFACACVQKNDGYNIHKTPGGLMYVREWNNMQYVSAAAFLTAVYSQYLTASNAKLTCPRGQLVEPRELLGFAKSQADYILG KNPKSISYMVGYGQQYPIHVHHRGASIASIFLLRSSVECVQGFETWYRKADANPNVVYGALVGGPDQNDNFSDQRANYEQTEPTLTASAPLIGLFSKLQS ASGNRGYQPKASPVTHYTKPTPAPKTVTGSHVPLAFLHSITQSWTVGTTTYYRHKVTIKNMSQKPITSIKLVAQNLLGSIWGLTPAPEKDTYVLPEWVKV LQPGSEINFVYVQGGPQAKFSVLSYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10010201 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015643 [exp]	6.2	0.7914
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	8.7	0.8529
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	13.4	0.8526
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	16.1	0.7923
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	21.2	0.8434
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	21.9	0.8034
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	22.0	0.8388
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	22.9	0.8379
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	24.3	0.7972
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	27.3	0.8396

Compare expression of checked genes

Lus10010201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.