Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48920 166 / 4e-43 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT3G18610 165 / 4e-42 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT1G45100 72 / 8e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 64 / 8e-12 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G03495 63 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G55340 64 / 4e-10 PHIP1 phragmoplastin interacting protein 1 (.1) AT5G51730 63 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G41690 64 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G03480 62 / 7e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 61 / 2e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017403 [exp] 366 / 1e-106 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10030327 [exp] 72 / 1e-12 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10002222 [exp] 68 / 1e-11 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 67 / 2e-11 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10003287 [exp] 68 / 4e-11 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10026514 [exp] 62 / 6e-10 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031786 [exp] 59 / 1e-08 AT1G16610 207 / 7e-63 arginine/serine-rich 45 (.1.2.3) Lus10031212 [exp] 59 / 1e-08 AT1G16610 210 / 6e-64 arginine/serine-rich 45 (.1.2.3) Lus10034685 [exp] 57 / 3e-08 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093100 [exp] 219 / 7e-60 AT1G48920 229 / 9e-67 PARALLEL 1, nucleolin like 1 (.1) Potri.007G071100 [exp] 208 / 5e-57 AT1G48920 243 / 1e-72 PARALLEL 1, nucleolin like 1 (.1) Potri.010G209701 [exp] 73 / 5e-13 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.015G086500 [exp] 65 / 1e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 64 / 1e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G061600 [exp] 63 / 2e-10 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.012G038200 [exp] 60 / 6e-10 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 60 / 2e-09 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.011G130300 [exp] 58 / 2e-09 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 59 / 1e-08 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10010202 pacid=23154227 polypeptide=Lus10010202 locus=Lus10010202.g ID=Lus10010202.BGIv1.0 annot-version=v1.0 ATGGATGATTTTGCAGCTAAGAGGCAAACTGAAGAACCTCTGGAGAAGGTTGTGAGTAGTAAGAAGCAGAAGAAGGATCTTGTTGTGCCACAAGTTGTTG AGAAGGAGAAATCTAAAGTGAAGGCGCAGAACAAGATGAAGAAAGTGGATTCCAGTAGTTCGGATGAAACTTCCTCCGAGGAAGAAGAAAAGGTTATGAA AATAGTTACTACTGCAAAGCCTCCTGTCCAGGAATCAAGCAGTGATGAGTCCTCTTCATCTGATGATGAGCCTGCTCCTAAGGCCGCCCTTCATAAGAAA GGGCAGGTAGCTGCAGCGAAAGCAAAGCCGGCTGTAAGTAGTAGTAGTGATTCTTCCGAGGATGATTCTGATTCTGATTCTGACAAGAATTTCTCACACC TTGTGAGATTGCAGAAGAAGTCATCAACGCCTGCTTTCAAGAAGGCAGCTCCAGCATCTTCAGATGACAGTGATGATGACTCCTCTGACGAGGATGATAA GGTTACTGCTGTGCCGAAAAAGGCGGCTCCCCCTGCTGCTCAAAAGAAATCTGATTCCAGTGACAGCTCCGAGTCTGAGGATGAGAGTGATTCTGATGAG GAGCCTGCCCCTAAGGCTGCCGTTCCTAAGAAAGAGCAAGTAAAAAAATCAAAGCCGGCTGCGAGCAGTAGTAGTGATTCTTCAGATGATGAATCTGATT CTGACGAGGAGCCTGCTGCCAAACCAGCTGCTCCTAAGGTTGTTCCAGCAGCTACAAATGGCTCAAAGAAGAAAGATGACAGCTCTGACGACAGCTCTGA CGACAGCTCTGATGATGACTCTGATTCAGATGCAATGGATGTGGATGAGAAGAAGTCATCCAAGCCTGCTCCTCCTGCCAAGAAGGCAGCATCTTCATCT GACTCGTCAGATGACAGTGATGATGACTCTGATGAGAATGAGAAGACTACTGCTGTGCCAAAGAAGGCTGTTGCCCCTGCTGCCCAAAAGAAATCTGAAT CCAGTGATAGTTCAGAGTCTGAGAGCGATTCTGATGAGGATATGCCTGCTGTAGCCAAAACTGCTGCTGGTTCAAAATCAAAACCGGAAGCAATGGATGA GGATGACAGTGATGATGATAGTGAAGATGAGGCTGTTACTAAAAAGGTCACTAAAGCAACTACAAAGAAAGAAAGCAGCAGTGAAGATGAAAGTTCTGAT GATGAAAGTGAAGATGAAAAACCTGCAAAGACCCCGGTGAAAAAGGTCGAGCCAACCAGTGCATCGAAGGAGCCCAAAACTCCCACTCCCAATAATGACT CTACTGAATCAAACACCCTGTTTGTTGGCAACCTTTCATTTGAAGTCGAAAAATCTGACATTGAAAATTTCTTCAAAGATTGTGGAGAGCTTGTCGATAT TCGTTTTGCAATGGACGCAGAACAAAATTTCAAGGGATTTGGCCATGTTGAATTTGCTACTGCAGAAGAAGCAAAGAAGGGTCTTGAGTTGGATGGTCAG TCTTTAAATGGCAGAAGGATTAGACTTGACCTTGCTCGTCCAAGGGGTGAAAGATCCCAAACTCCATTTAGCGGTAAGGACAACCCTTCATTCCAGAAGG GTGGAAGAGGTCAGGGTCAGAAGGTATTCGTGAGAGGATTCAACACGGCACTTGGGGAGGATGAGGGTTTAGCAGAGCTCAGCTTGGTTTCCTTCCCTAC TTCCTCAGACCTTCTTCTTCATCCTTTAGTTTCATCAGCGATGGGCAAGTCTAGCAAAAAGGTTGAGGCTGCTGCCGCTGTTGTGGTTTCCCCCAAGTCT GCTAAGAAAGGAGGCAAGAGGCAAGCTGAGGAAGCCTTGGAGAAGGTTGTGAGTGCTAAGAAACAGAAGAAGGACGTTGTTAAGCAGCAGGTCGTTGAGA AGGAGAAATCCAAAGTGAAGGCCCAGAAGAAGAAGAAAGAGGAATCCAGCTCCTCCGATGATTCTTCTGACGAGGAAGAAGAAAAGGTTATAAAAAAAGT TACTGCTGCAAAGCCTGCTGTCGTTGACTCTAGCAGTGATGATTCCTCTTCATCTGATGATGAACCTGCCCCTAAGGCCAAAAAAGCCACTGCTGTGGCT GCCACTAAAAAATCGAAGCCTGCTAAGAGCAGTAGTAGTGATTCTTCAGAGGATGAATCTGATTCTGACGAGGAGCCTGCTGCTAAGGTTGTTCCAGCCG CTACAAATGGCTCAAAGAAGAAAGAGGAGAGCTCAGATGACAGCTCAGATGACTCTGATTCAGATGTAATGGATGTGGATGAGAAGAAGCCATCCAAGCC TGCTGCTCCTGTCAAGAAGGCAGCATCTTCAACATCTGACTCATCAGATGACAGCGACGAGGACTCCTCTGATGAGGATGAGAAGAAGAAGCCATCCAAG CCTGCTGCTCCCGCCAAGAAGGCAGCTTCTTCATCATCAGATGACAGTGATGATGACTCCTCTGACGAGGATGAGAAGACTGCTTCTGTGGCAAAGAAGG CTGCTGTCCCTGCTGTGGCAAAGAAAGCAGATTCCAGCTCTGACTCAGAAGAGAGTGATTCTGACGAGGAGAAGCCTGCTGTAGCCAAAGCTCCTGCCGC TAAGGATGAGGATGACAGTGATGATGACAGTTCTGATGAAAGTGATGATGAGCCTGTTACTAAAAAGGCGACTAAGGCAACTACAAAGAAAGAAAGCAGC AGTGAAGATGAAAGTTCTGATGAAGAAAGTGAAGATGAGAAACCTGCAAAGACCCCAGTGAAAAAGACTGAGACGACCAGTGCAGTGAAGGAGCCCAAAA CTCCCACCACCAACGACTCTACTGAATCTAGCACCCTGTTTGTTGGCAACTTGCCTTTTGATGTTGAAAAATCTGACATTGAAAATTTCTTCAAGGAGTG TGGACAGGTTGTCGATGTCCGTTTTGCTATGGATGCTGAGCAAAATTTCAAGGGATTCGGGCATGTTGAATTTGGATCTGTAGAAGAGGCTAAAAAGGCT CTTGAATTGAATGGCGAGTTGTTGAATGGCAGAGGACTTAGACTTGACCTTGCTCGTCCTAGGGGTGAGAGGACCCAGACTCCATTTAGCGGAGGTAAAC CTCAGGCTCAGAAGATCTTTGTTAGGGGATTCGACACCTCTCTGGGTGAAGATGAGATTAAGGGCTCCCTATCCGAGCACTTCGGCACATGCGGACAAGT TAACCATATCGCCCTACCAAAAGATTATGAGACAGGCACCTTCAAAGGAATGGCCTACGTTGAGTTTGCTGACACTTCATCCATAAGCAAAGCTTTGGAG CTCGATGGAAGTGAGCTGGGGGGAGAGTATTTGACTGTGCAGGAAGCAAGGCCTAGGCCGGACCGTGATGCAAGTGGCGGTGGAGGTAGAGGATTTGGTA GCGGTGGTGGTGGTAGGGGTTTTGGAAGCGGTGGTGGTGGTAGAGGCAGAGGCAGAGGTGGCGGCAGGGACTTTGGTGGTAGAGGCGGTAGGGATGGTGG TGGCCGTTTCGGAGGTGGTCGTGGTGGCGGTAGAGGCGGAGGCGGAAGAGGTTTCGGTGGCAGAGGCCGTGGAACACCTCAACATGAAGGTAAGAGGAAG ACCTTCGATGATTAG
AA sequence Show only first row Show all	>Lus10010202 pacid=23154227 polypeptide=Lus10010202 locus=Lus10010202.g ID=Lus10010202.BGIv1.0 annot-version=v1.0 MDDFAAKRQTEEPLEKVVSSKKQKKDLVVPQVVEKEKSKVKAQNKMKKVDSSSSDETSSEEEEKVMKIVTTAKPPVQESSSDESSSSDDEPAPKAALHKK GQVAAAKAKPAVSSSSDSSEDDSDSDSDKNFSHLVRLQKKSSTPAFKKAAPASSDDSDDDSSDEDDKVTAVPKKAAPPAAQKKSDSSDSSESEDESDSDE EPAPKAAVPKKEQVKKSKPAASSSSDSSDDESDSDEEPAAKPAAPKVVPAATNGSKKKDDSSDDSSDDSSDDDSDSDAMDVDEKKSSKPAPPAKKAASSS DSSDDSDDDSDENEKTTAVPKKAVAPAAQKKSESSDSSESESDSDEDMPAVAKTAAGSKSKPEAMDEDDSDDDSEDEAVTKKVTKATTKKESSSEDESSD DESEDEKPAKTPVKKVEPTSASKEPKTPTPNNDSTESNTLFVGNLSFEVEKSDIENFFKDCGELVDIRFAMDAEQNFKGFGHVEFATAEEAKKGLELDGQ SLNGRRIRLDLARPRGERSQTPFSGKDNPSFQKGGRGQGQKVFVRGFNTALGEDEGLAELSLVSFPTSSDLLLHPLVSSAMGKSSKKVEAAAAVVVSPKS AKKGGKRQAEEALEKVVSAKKQKKDVVKQQVVEKEKSKVKAQKKKKEESSSSDDSSDEEEEKVIKKVTAAKPAVVDSSSDDSSSSDDEPAPKAKKATAVA ATKKSKPAKSSSSDSSEDESDSDEEPAAKVVPAATNGSKKKEESSDDSSDDSDSDVMDVDEKKPSKPAAPVKKAASSTSDSSDDSDEDSSDEDEKKKPSK PAAPAKKAASSSSDDSDDDSSDEDEKTASVAKKAAVPAVAKKADSSSDSEESDSDEEKPAVAKAPAAKDEDDSDDDSSDESDDEPVTKKATKATTKKESS SEDESSDEESEDEKPAKTPVKKTETTSAVKEPKTPTTNDSTESSTLFVGNLPFDVEKSDIENFFKECGQVVDVRFAMDAEQNFKGFGHVEFGSVEEAKKA LELNGELLNGRGLRLDLARPRGERTQTPFSGGKPQAQKIFVRGFDTSLGEDEIKGSLSEHFGTCGQVNHIALPKDYETGTFKGMAYVEFADTSSISKALE LDGSELGGEYLTVQEARPRPDRDASGGGGRGFGSGGGGRGFGSGGGGRGRGRGGGRDFGGRGGRDGGGRFGGGRGGGRGGGGRGFGGRGRGTPQHEGKRK TFDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	0	1
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	1.0	0.9778
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015810 [exp]	2.4	0.9302
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	2.8	0.9475
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	3.5	0.9403
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	4.0	0.9261
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	4.5	0.9355
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	6.6	0.9397
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	7.5	0.9265
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	8.8	0.8999
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	9.5	0.9234

Compare expression of checked genes

Lus10010202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.