Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66200 633 / 0 ATGSR2, GLN1;2 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) AT5G37600 631 / 0 ATGLN1;1, GLN1;1, ATGSR1 ,GSR 1 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) AT5G16570 621 / 0 GLN1;4 glutamine synthetase 1;4 (.1) AT3G17820 614 / 0 GLN1;3, GLN1.3, ATGSKB6 GLUTAMINE SYNTHETASE 1;3, ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE KB6, glutamine synthetase 1.3 (.1) AT1G48470 592 / 0 GLN1;5 glutamine synthetase 1;5 (.1) AT5G35630 582 / 0 ATGSL1, GLN2, GS2 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017404 [exp] 678 / 0 AT5G37600 642 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10020812 [exp] 623 / 0 AT5G37600 672 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10004037 [exp] 622 / 0 AT5G37600 671 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10034016 [exp] 577 / 0 AT5G35630 748 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Lus10001115 [exp] 575 / 0 AT5G35630 701 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Lus10012536 [exp] 569 / 0 AT5G37600 599 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034700 [exp] 633 / 0 AT5G37600 632 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.007G069600 [exp] 632 / 0 AT5G37600 653 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.005G093200 [exp] 630 / 0 AT1G66200 647 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.017G131100 [exp] 627 / 0 AT1G66200 600 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.004G085400 [exp] 625 / 0 AT1G66200 593 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.012G043900 [exp] 625 / 0 AT5G37600 600 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.010G029100 [exp] 580 / 0 AT5G35630 711 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.008G200100 [exp] 578 / 0 AT5G35630 704 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.017G127901 [exp] 94 / 3e-23 AT1G66200 106 / 2e-28 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.017G138201 [exp] 0 / 1 AT1G66200 0 / 1 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03951 [flax] [poplar] Gln-synt_N Glutamine synthetase, beta-Grasp domain CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10010203 pacid=23154250 polypeptide=Lus10010203 locus=Lus10010203.g ID=Lus10010203.BGIv1.0 annot-version=v1.0 ATGTCTGCCCTCAACGATCTCATCAACCTCAACCTCTCCGACTCCACCGACAACAAGATCATCGCCGAATACATTTGGGTTGGTGGATCTGGCCTTGACT TGAGGAGCAAAGCAAGGACACTTACCGGACCGATCAAGGACCCGTCGGAGCTGCCGAAATGGAACTACGACGGCAGCTCGACTAACCAAGCTTCCGGAGA CGACAGCGAAGTCATCATCTACCCTCAGGCGATCTTCAAGGATCCATTCAGGAGAGGAAACAACATCCTGGTTATGTGCGATGCTTATACTCCAGCCGGC GAGCCAATCCCGACCAACAAGAGATCCGCTGCCGCCAAGATCTTCAGCCACCCTGATGTCGCCAAAGAGGTCCCATGGTATGGGATCGAGCAAGAGTACA CACTTTTGCAGAAGGAAATCAACTGGCCACTTGGGTGGCCAGTTGGTGGCTTCCCTGGTCCTCAGGGTCCGTACTACTGCGGAGTAGGAGCTGACAAGGC ATTCGGGAGGGACATCGTTGACGCGCACTACAAGGCATGCTTGTACGCTGGTATCAACATCAGCGGTATCAACGGTGAGGTCATGCCAGGACAGTGGGAG TTCCAGGTTGGTCCTTCCGTTGGAATCTCTGCAGGTGACCAAGTCTGGGTTGCTCGTTACATCCTCGAGAGGATCACTGAGATTGCTGGAGTTGTGGTCA GCTTTGACCCTAAGCCAATCAAGGGTGACTGGAATGGTGCTGGTGCTCACACCAACTACAGCACCAAGTCGATGAGGGAAGATGGAGGGATTGATGTGAT CAGGGCTGCAATCGAGAAGTTGGGGATGCGACACAAAGAGCACATCTCCGCCTATGGCGAGGGTAACGAGAGGAGATTGACTGGCCACCACGAGACCGCT GACATCCACACCTTCAGCTCGGGCGTGGCCAACAGAGGAGCATCGATCCGTATCGGGAGGGACACCGAGAAGGATGGAAAAGGTTACTTTGAGGACAGAA GGCCGGCCTCGAACATGGATCCGTACGTGGTAACATCCATGATTGCTGAGACCACCATTCTGTGGAAGCCTTGA
AA sequence Show only first row Show all	>Lus10010203 pacid=23154250 polypeptide=Lus10010203 locus=Lus10010203.g ID=Lus10010203.BGIv1.0 annot-version=v1.0 MSALNDLINLNLSDSTDNKIIAEYIWVGGSGLDLRSKARTLTGPIKDPSELPKWNYDGSSTNQASGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAG EPIPTNKRSAAAKIFSHPDVAKEVPWYGIEQEYTLLQKEINWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWE FQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIKGDWNGAGAHTNYSTKSMREDGGIDVIRAAIEKLGMRHKEHISAYGEGNERRLTGHHETA DIHTFSSGVANRGASIRIGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	1.7	0.9417
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	2.2	0.9239
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	3.5	0.9341
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	4.0	0.9093
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	4.5	0.9151
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	4.9	0.9123
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10015909 [exp]	6.2	0.9046
AT4G33420			Peroxidase superfamily protein...		Lus10029543 [exp]	6.2	0.8920
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	6.3	0.9272
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	6.7	0.9104

Compare expression of checked genes

Lus10010203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.