Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 810 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 764 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 758 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G27020 673 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G53550 652 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G41000 641 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT5G24380 632 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 620 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G45450 232 / 8e-72 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017406 [exp] 1279 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10013323 [exp] 805 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 786 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 784 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10012549 [exp] 679 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 677 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 669 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10022360 [exp] 635 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 618 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093800 [exp] 951 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 786 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 784 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 784 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 777 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 754 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.001G327300 [exp] 674 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 645 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 590 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 563 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10010205 pacid=23154190 polypeptide=Lus10010205 locus=Lus10010205.g ID=Lus10010205.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGTGGTGGTGGTGACGGAGGCACCGCCATGCAGAGGCGAAACCGGTACGCCGACGAGAGCGGTCTGAACTCCGACGAAATCCACTCAGACG AGACTGCAGCAGGGGAAGGGAAGATATCGGTGGAGGAGGCGTTTAAAGACGAGGAGGTGCCGACGTGGAGGCAGCAGCTGACTGTTAGGGCGCTGTTCAC TAGCCTTATACTGAGCGTCGTGTTTAACTTCATCGTCTGCAAGCTGAATCTCACCACCGGCGTTATCCCTTCCCTCAACGTCGCCGCTGGACTGTTAGGT TTCGCGATCGTGAAAACCTACACCAGCTTGTTATCTAAAGCTGGACTCCTCAAGCAGCCGTTCTCCCGTCAGGAGAACACCGTCATCCAGACCTGCATCG TCGCTTCCTCCGGCATCGCCTTCAGCAGCGGAACGGCGAGTTACATGCTGGGGATGAGTCCGTACATAGCAGGGCAAGAGGAGATCGGGAACATCGCTTC GAACGTCAAGGTTCTGCACATCGGGTGGATGATTGGATTTCTGTTTGCAGTCAGCTTCGTCGGACTGTTCTCAATTGTGCCATTGAGAAAACAGATGATT CTGAACTACAAGCTCAGCTACCCTAGCGGAACGGCCACTGCTTACCTGATCAACAGCTTCCACACTCCGAAAGGAGCAGCTCTCGCCAAGAAGCAAGTCG CCGTCCTCTTCAAAGCTTTCGGCGGAAGCTTCATCTGGGCGTTTTTCCAGTGGTTCTTCGCCGCCGGTGATGACTGTGGCTTCGTTAACTTCCCTACTTT CGGCCTCCAAGCGTTCAAACAAAAGTTCTTCTTTGATTTCTCGTCAACTTACGTTGGTGTGGGGATGATCTGTCCGTACATGGTCAACATCTCCTTGCTG TTCGGAGCAGTGATTTCTTGGGGGATAATGTGGCCGTTGATCTCTGCCAAGAAAGGCGACTGGTACAGCGCCGATCTCAGCCCCAGCAGTCTCCATGGCA TCCAAGGTTACAGGGTATTTACAGCGATTGCGATTATGCTGGGCGACGGACTGTTCCAAGTAATCTACCTAATCGTCAAATCAGCATACTTCTACATCAA GAACAACGGCAGCTCCAAAAAGGATACTTCCGAAGGCACCGATTCCGAATCCTCAAGCTACGACGACAAACGCCGAATTGAATACTTCCTTCGCGATCAG ATTCCAAATTGGCTAGCAATCGCCGGCTACATAGCACTAGCCCTAATCTCAATCTTCACCGTCCCTGTAATCTTTCCGCCACTCAGACCTTACCACATCC TCGTAGCATACCTAATCGCTCCGATCCTCGCATTCTGCAACGCGTACGGATGTGGCCTTACCGACTGGTCCTTGGCATCCAACTACGGAAAATTCGCGAT CATAATCTTCAGCGCGTGGGTGGGACTCAAGGACGGCGGAGTCGTCGCCGGACTCGCGTCGTGCGGTGTCATGATGTCGATCGTCTCCACGGCGTCCGAT CTGATGCAGGATTTCAAAACAGGGTACCTCACGCTCTCTTCCCCACGCGCCATGTTCTTCTCGCAGATCTTCGGTACTGCGGTCGGCTGCCTCATCACCC CTCCGGTGTTCTGGTTCTTCTACAAGGCTTACCCGATCGGAAACCCGGACGGACCTTACCCTGCCCCGTACGGACTTCTCTACCGCGGAATTGCGCTTTT GGGAGTGGAAGGTGTCTCCTCTCTGCCGCGTAACTGTCTCGCGATGGCGATTGGATTCTTCTTTCTGGCGATGGTTATCAATTTGGTTAAGGAGGCGTTG AAATCGTATGGATATAGAGTTCACAAGTATATCCCCAGTCCGATGTGTATGGCGATTCCGTTCTACCTGGGGGCTTACTTCGCCATTGATATGTGCTTGG GGAGCCTGATTCTGTTTGTTTGGACTTGGTATAATAGGCGTCAAGCGATGGATTACTGTCCCGCTGTGGCGTCCGGGTTGATCTGCGGTGATTCTTTGTG GGGCATTCCGGCGGCGATTCTGTCCATGGCCGGTATTAGTGCTCCGATCTGCATGAAGTTTTTGTCCGCCGGTGCTAACAAGAAGGTGGATGCCTATTTG GCTGGTTGA
AA sequence Show only first row Show all	>Lus10010205 pacid=23154190 polypeptide=Lus10010205 locus=Lus10010205.g ID=Lus10010205.BGIv1.0 annot-version=v1.0 MAGGGGGDGGTAMQRRNRYADESGLNSDEIHSDETAAGEGKISVEEAFKDEEVPTWRQQLTVRALFTSLILSVVFNFIVCKLNLTTGVIPSLNVAAGLLG FAIVKTYTSLLSKAGLLKQPFSRQENTVIQTCIVASSGIAFSSGTASYMLGMSPYIAGQEEIGNIASNVKVLHIGWMIGFLFAVSFVGLFSIVPLRKQMI LNYKLSYPSGTATAYLINSFHTPKGAALAKKQVAVLFKAFGGSFIWAFFQWFFAAGDDCGFVNFPTFGLQAFKQKFFFDFSSTYVGVGMICPYMVNISLL FGAVISWGIMWPLISAKKGDWYSADLSPSSLHGIQGYRVFTAIAIMLGDGLFQVIYLIVKSAYFYIKNNGSSKKDTSEGTDSESSSYDDKRRIEYFLRDQ IPNWLAIAGYIALALISIFTVPVIFPPLRPYHILVAYLIAPILAFCNAYGCGLTDWSLASNYGKFAIIIFSAWVGLKDGGVVAGLASCGVMMSIVSTASD LMQDFKTGYLTLSSPRAMFFSQIFGTAVGCLITPPVFWFFYKAYPIGNPDGPYPAPYGLLYRGIALLGVEGVSSLPRNCLAMAIGFFFLAMVINLVKEAL KSYGYRVHKYIPSPMCMAIPFYLGAYFAIDMCLGSLILFVWTWYNRRQAMDYCPAVASGLICGDSLWGIPAAILSMAGISAPICMKFLSAGANKKVDAYL AG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10010205 [exp]	0	1
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	7.9	0.6749
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	9.3	0.6845
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	20.6	0.6711
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	23.2	0.6508
					Lus10026928 [exp]	26.0	0.6508
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	28.5	0.6508
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	30.7	0.6508
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	32.9	0.6508
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	39.0	0.6356
					Lus10040877 [exp]	45.0	0.5102

Compare expression of checked genes

Lus10010205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.