Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19760 717 / 0 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 603 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 511 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 507 / 1e-179 EIF4A-2 eif4a-2 (.1.2) AT1G72730 501 / 3e-177 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 284 / 6e-91 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 271 / 4e-86 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 263 / 1e-82 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 233 / 3e-71 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 228 / 3e-70 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017407 [exp] 829 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 513 / 0 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10006878 [exp] 474 / 8e-167 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 474 / 8e-167 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017153 [exp] 473 / 5e-166 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 333 / 7e-113 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017804 [exp] 278 / 9e-89 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 275 / 2e-87 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 271 / 5e-86 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070000 [exp] 717 / 0 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G093900 [exp] 716 / 0 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 509 / 2e-180 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 506 / 3e-179 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 505 / 7e-179 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 503 / 6e-178 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 279 / 6e-89 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 278 / 6e-89 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G119000 [exp] 234 / 4e-72 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 227 / 5e-69 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10010206 pacid=23154200 polypeptide=Lus10010206 locus=Lus10010206.g ID=Lus10010206.BGIv1.0 annot-version=v1.0 ATGGCGGCGAGCGTGGTTCCACCGGGGCGAGGAGCCCGCAGGACGACGGCTGACGACGAGAAGCTCGTCTTCGAGACGACGGAAGGAATCGAGCCGGTGT CCAGTTTCGAGAACATGGGGATCAATGACAAGCTGCTCCGAGGAATCTACGAGTACGGCTTCGAGAAGCCTTCCGCCATCCAGCAGCGAGCCGTTATGCC GATAATTAAGGGCCGGGACGTCATTGCCCAGGCGCAATCCGGTACCGGGAAGACCTCCATGATTGCCCTCTCTGTTTGCCAGGTCGTCGACATTAACAGC AAAGAGGTGCAAGCATTGATATTGTCTCCAACAAGAGAACTGGCTGCACAAACAGAGAAGGTAATACTGGCAATCGGTGACCACTTGAACATTCAAGCAC ATGCTTGCATTGGGGGGAAAAGTGTGGGTGAAGATATTAGGAAGCTAGAGTATGGAGTTCATGTGGTATCAGGAACACCGGGTAGAGTATGTGATATGAT CAAGAGAAGGACTTTGCGAACTAGAGCCATAAAGCTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGTTTCAAAGATCAAATATATGATGTC TACAGATATCTTCCCCCAGAGCTTCAGGTTGTTTTGATCTCTGCCACATTGCCAAATGAAATTTTGGAGATTACGGGCAAGTTCATGACAGATCCAGTGA AGATTCTAGTCAAACGTGATGAACTGACTTTGGAGGCAAGTAATAGCATTAATGGTGGCATCAAACAGTTTTTTGTTGCTGTGGAAAAGGAAGACTGGAA ATTCGATACTCTTTGTGACCTTTATGATACACTTACCATCACCCAAGCTGTTATATTCTGCAATACAAAACGAAAGGTTGATTGGTTAACTGAGAAGATG CGATCCAGTAACTTCACAGTCTCGGCAATGCATGGTGACATGCCTCAGAAGGAAAGAGACGCAATTATGAAAGAGTTCAGGGATGGTACTACACGTGTTC TGATCACTACAGATGTTTGGGCTCGCGGGCTAGACGTTCAGCAGGCAAGTTGTTTCTTGCTTTATTCGTTTGGTATCGTGTCTCTTGTGATAAACTATGA CCTTCCAAACAATCGTGAGCTGTACATTCATCGAATCGGTCGATCGGGACGTTTTGGTCGCAAGGGTGTGGCCATCAACTTTGTGAAATCGGATGATATC AGGATTCTGCGAGACATCGAGCAGTACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGACCTGATATAA
AA sequence Show only first row Show all	>Lus10010206 pacid=23154200 polypeptide=Lus10010206 locus=Lus10010206.g ID=Lus10010206.BGIv1.0 annot-version=v1.0 MAASVVPPGRGARRTTADDEKLVFETTEGIEPVSSFENMGINDKLLRGIYEYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALSVCQVVDINS KEVQALILSPTRELAAQTEKVILAIGDHLNIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDV YRYLPPELQVVLISATLPNEILEITGKFMTDPVKILVKRDELTLEASNSINGGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM RSSNFTVSAMHGDMPQKERDAIMKEFRDGTTRVLITTDVWARGLDVQQASCFLLYSFGIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI RILRDIEQYYSTQIDEMPMNVADLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	0	1
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	1.0	0.8794
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10020599 [exp]	5.1	0.7927
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	12.0	0.7835
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	14.8	0.7318
AT5G13520			peptidase M1 family protein (....		Lus10040361 [exp]	17.0	0.7613
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	25.9	0.6717
					Lus10030881 [exp]	34.0	0.7507
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10021695 [exp]	38.6	0.7011
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	41.2	0.7266
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	51.4	0.7447

Compare expression of checked genes

Lus10010206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.