Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 112 / 3e-30 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008975 [exp] 131 / 1e-40 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007500 [exp] 135 / 1e-38 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10028977 [exp] 125 / 5e-35 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 66 / 1e-13 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010209 [exp] 40 / 0.0003 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10017408 [exp] 40 / 0.0003 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 100 / 1e-25 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 81 / 4e-20 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10010207 pacid=23154242 polypeptide=Lus10010207 locus=Lus10010207.g ID=Lus10010207.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCAGCTTTCTCAGTAGAACGATCTTTATCCGGGATCTCATTGTCTCCATTTCTACCCTCGGACTTAATGAAGCTACTGGGAGGTGCTGTTG CAGAATTACATTTGATGATAGACGAGCACTTCGGCATCAGCGTTATCGAATACATGGCTTCAGGAGCCATACCTATAGTTAAAGAGTTTGCAGAGGCCAT CCTTGAGGTCATAAAGATGGCGGAATCCGAGAGGCTCGAGATGGCTGCAGCCGCCAGGAGAAAGGCTGGCAAGTTTTCGGAACATAGGTTTTACAAGGAT CTCGAAACTGCCATTCGACCTGAACTAGTACAAAGCGGTTCCACCACCAATACCAGATAA
AA sequence Show only first row Show all	>Lus10010207 pacid=23154242 polypeptide=Lus10010207 locus=Lus10010207.g ID=Lus10010207.BGIv1.0 annot-version=v1.0 MAASAFSVERSLSGISLSPFLPSDLMKLLGGAVAELHLMIDEHFGISVIEYMASGAIPIVKEFAEAILEVIKMAESERLEMAAAARRKAGKFSEHRFYKD LETAIRPELVQSGSTTNTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10010207 [exp]	0	1
AT3G28390		ABCB18, PGP18	ATP-binding cassette B18, P-gl...		Lus10043069 [exp]	6.5	0.5860
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	9.5	0.6108
					Lus10042413 [exp]	15.0	0.5931
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	16.6	0.5906
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10040230 [exp]	17.7	0.5748
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	23.0	0.5706
AT3G52470			Late embryogenesis abundant (L...		Lus10027133 [exp]	26.5	0.5476
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	26.7	0.5491
					Lus10013650 [exp]	29.4	0.5863
					Lus10012416 [exp]	31.5	0.5424

Compare expression of checked genes

Lus10010207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.