Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28610 251 / 1e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 249 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28600 246 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 246 / 4e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 245 / 6e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 244 / 6e-78 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28570 243 / 3e-77 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G31550 243 / 5e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 239 / 5e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 239 / 7e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024085 [exp] 429 / 4e-150 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 332 / 5e-112 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 327 / 5e-110 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015476 [exp] 214 / 2e-64 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10019947 [exp] 195 / 3e-59 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 183 / 4e-53 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 171 / 3e-47 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012644 [exp] 149 / 3e-41 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034763 [exp] 144 / 2e-39 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 288 / 6e-95 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 221 / 3e-69 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024900 [exp] 199 / 2e-60 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 198 / 4e-60 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G064100 [exp] 186 / 1e-57 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.005G025000 [exp] 191 / 3e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 191 / 3e-57 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 188 / 3e-56 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.015G089700 [exp] 157 / 3e-44 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 150 / 6e-42 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10010208 pacid=23154234 polypeptide=Lus10010208 locus=Lus10010208.g ID=Lus10010208.BGIv1.0 annot-version=v1.0 ATGGCGCCTTATCTATACATGTTGTTTCTCCTCCTCCCATTCATTTCAATCGGGTCCTCCACGCCACCACAACCATGCTACACCTCCCTCTTCAGCTTCG GCGACTCGGCCACCGCCACCGGCGTCCAACCTTCCGATTTAGTCCCCGGAACACTCGGTCCCCACTGCGCATTCAGTCCGTACGGCTCCACCTTCTTCCA CAAGCCAACCGGCCGCTGCAGTAACGGTCGAAACATCGTCGACTTCCTCTCCCGCCATCTCCGACTCCCTTTCCTCGAAGCTTACCACGGCGATCCGATC GCCGCCGCCGCCGCCTCCTACGCTCACGGCGCCAACTTGGCCGTGGTATCGGCCACCGCCTTGAGCCCGCAGGTGCTCAGAAGCAGAGGAATCATGTCCA GCTGCCTCAACTGCTCGCTCGACGTCCAGATTGCGAGGTTCAAGACATTGGTCAGATCGCGGAGATTTGATCTGAAGAAATCGCTGATTCTGCTGGGAGA GATCGGCGGCGTTGACTACCAACGTGCCTCCGTTGAGAATTCCACCTCCCACAGCCAGGCCGCGGTGGAATCGCTGATTCCGATCGTGGTTAAGCGAATC GGATCTGCAATTCAACAGCTAATCAAATTCGGAGCGGTGAATTTCTTAGTCCCGGGGGATTTCCCCAAAGGCTGTTTCCCGTCGTATTTGACGATATTTC AGAGCAGCAATCGAAGCGACTACGATCCTCGAACAGGGTGTTTGATTTACCACAATAGATTCTCCTACCGCCATAATCAGATGCTCCGGAGAGAGATCAA ACGGGTCGGTAAGCTCCATCCGGAGGTTAGTATAAAGTACGCGGACTATTACAGGTCGTCCATGCGGATGCACCTTGACCCGGAGAAGTACGGGTTTGCG CCGGCGACTATCAACAGGGCATGCTGCGGCGCCGGAGGGCCGTACAATTACAACAGGACGGCGGTTTGCGGGAGACCCGGAGCGGTGGCTTGTGGACATC CGACGGCGTATATCAAGTGGGACGATCATCACTATACGGACTCGGCTAACCGAGTTATTGCCAGAGATGTATTTAAAACCGGATTTCTTCGGTTTAGATC AACTTGTAACCACTAA
AA sequence Show only first row Show all	>Lus10010208 pacid=23154234 polypeptide=Lus10010208 locus=Lus10010208.g ID=Lus10010208.BGIv1.0 annot-version=v1.0 MAPYLYMLFLLLPFISIGSSTPPQPCYTSLFSFGDSATATGVQPSDLVPGTLGPHCAFSPYGSTFFHKPTGRCSNGRNIVDFLSRHLRLPFLEAYHGDPI AAAAASYAHGANLAVVSATALSPQVLRSRGIMSSCLNCSLDVQIARFKTLVRSRRFDLKKSLILLGEIGGVDYQRASVENSTSHSQAAVESLIPIVVKRI GSAIQQLIKFGAVNFLVPGDFPKGCFPSYLTIFQSSNRSDYDPRTGCLIYHNRFSYRHNQMLRREIKRVGKLHPEVSIKYADYYRSSMRMHLDPEKYGFA PATINRACCGAGGPYNYNRTAVCGRPGAVACGHPTAYIKWDDHHYTDSANRVIARDVFKTGFLRFRSTCNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	0	1
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	1.7	0.8277
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	8.8	0.7927
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	9.5	0.7787
AT5G60370			unknown protein		Lus10038466 [exp]	11.0	0.7573
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	13.1	0.6967
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	13.7	0.7196
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	15.7	0.7700
AT3G53320			unknown protein		Lus10026478 [exp]	15.9	0.7599
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	16.2	0.7730
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	25.5	0.7462

Compare expression of checked genes

Lus10010208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.