Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13530 1709 / 0 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 1642 / 0 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT1G54960 234 / 1e-65 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 235 / 2e-65 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 234 / 5e-65 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 208 / 1e-56 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT4G08500 207 / 3e-56 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT5G66850 207 / 1e-55 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 208 / 5e-55 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT4G08470 195 / 1e-52 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017408 [exp] 1757 / 0 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10000135 [exp] 451 / 7e-149 AT3G13530 434 / 2e-143 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10034060 [exp] 240 / 5e-67 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 240 / 7e-67 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 234 / 3e-65 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 222 / 9e-61 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10003745 [exp] 200 / 4e-57 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 207 / 1e-56 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10042698 [exp] 207 / 1e-56 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070100 [exp] 1950 / 0 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094200 [exp] 1934 / 0 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.008G149500 [exp] 239 / 2e-66 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 235 / 4e-65 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.005G033400 [exp] 233 / 2e-64 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.013G022700 [exp] 230 / 1e-63 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.001G102900 [exp] 213 / 2e-56 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 208 / 7e-56 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 206 / 3e-55 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 206 / 9e-55 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10010209 pacid=23154192 polypeptide=Lus10010209 locus=Lus10010209.g ID=Lus10010209.BGIv1.0 annot-version=v1.0 ATGCTTGGCGATGAGATTGGAAAAGGAGCATATGGTCGGGTTTATAAGGGCTTGGATTTGGAGAATGGAGACTTCGTTGCTATCAAACAAGTGTCGTTGG AGAATATTGCTCAGGAGGACCTCAATATTATCATGAATCTGAACCATAAAAACATTGTGAAGTACCTTGGATCATTGAAGACGAAAACTCATCTTCACAT AATTCTTGAGTATGTAGAGAATGGTTCCCTTGCAAACATCATCAAGCCAAATAAATTCGGGCCTTTCCCGGAGTCTTTGGTTACTGTTTACATTGCTCAG GTTTTGGAAGGTTTGGTTTATCTACATGAACAAGGTGTCATCCATCGGGATATCAAGGGTGCAAACATATTAACTACTAAGGAGGGACTTGTGAAACTTG CCGATTTTGGTGTAGCAACAAAATTGACCGAGGCTGATGTTAATACACATTCAGTTGTTGGAACACCATACTGGATGGCCCCCGAGGTGATTGAAATGTC AGGGGTTTGTGCAGCTTCTGACATTTGGAGCGTTGGTTGTACTGTAATTGAACTTCTTACCTGTGTGCCTCCTTACTATGATTTGCAGCCTATGCCAGCA TTGTTTCGTATTGTTCAGGATGATCATCCTCCAATACCTGATAGTCTGTCTCCTGACATCACAGATTTCCTACGCCAATGCTTCAAGAAGGATGCTAGGC AGAGACCTGATGCAAAAACTTTGCTTTCTCATCCTTGGATACTGAACTCAAAGCGTACTTTAAACTCTTTGCGCAATACTCCTTCAATCAGGAGTATCCA GGAAGATGTTGAAAATGGAGACAATGAGATCCCTGATGAAGATCGTTCTATTGAGAAAGCTGAAGCTGCCATCACTGACTCTGAGACAGGCTCCAAGACT GAACTGTCTGGGGAAATGACTGATGAAATCAAGTCAGATAAGAACCAGTCTTCAGAAAATGATGAACCTGATGAATGCATTCACTCAGATCAGGCTCCAA CATTAGCTCTTCATGAGAAGCCACAACTACATCCAGATAAGGCATCTGAGCACAAGATAGCGTCTGGGAATTCTTCTCATGGCCCGGCAGATATGCGTGA TCAGGATGATGTACTAATGAATGGGAACTTGGAATTTCCTGATACGAGAAGCAAAAGTGTGGATAAGAAACATGGAGGGAAAGGTGCTGCCCTAAATGAA AGTAAATCATTTGGTTTTGTATCGAAAAGTCCAGATAATGGGTCGCAGAGGGCTGCAAAGACATCTGTGACTTTGGGTGGGAATGAGCTCAGTAGATTTA GTGACACACCAGGAGATGCTTCACTAGACGATTTATTTCATCCTCTTGATAAAGCTCCTGCAGATAGAACAGCTGAAGCTTCTACCTCTACATCAACATC ACATATGAATCAGGGTGGTACGCCTGTCTCTGATGCTGGGAAACATGACCTCGCTACTAAGTTGAGGGCCACTATTGCTCAGAAACAAATGGAGAATGAT GTGGGGAAGTCCAGTGATGGGGGTGACCTCTTTAGAGTCATGATGGGTGTTTTGAAGGATGATGTAATTGATTTTGATGGTTTGGTTTTTGACGAGAAGT TGCCGGCAGAAAATCTTTTTCCTTTACAGGTTGTTGAGTTCGGTAGATTAGTTGGGTCATTAAGACCTGAGGAATCAGAAGATGTTATTTCTTCTGCCTG CCAAAAACTTGTTGGTATGTTTCATCAGCGCCCAGAGCAAAAACTTGTCTTTATCACCCAGCATGGCTTGCTTCCCCTCATGGAATTACTTGAAGTACCG AAAACCCGTGTTATATGTTCTGTCCTCCAACTGATCAATCAAATTGTGAAAGATAATACTGATTTCCAGGAAAACGCTTGTCTTGTTGGCTTGATTCCTG TGGTCATGAGCTTTGCGGGGCCTGATCGTCCACGGGAGGTCCGCATGGAGGCTGCTTACTTCTTACAGAAGCTTTGCCAATCAAGGGAAATGGTTCACCT AGCTATCGATGGCATGTGGCAGGTCTTTAAGCTTCAGAGGTCCACCCCAGTGAAGGAGATTCCTGTGGTCATGAGCTTTGCGGGGCCTGATCGTCCACGG GAGGTCCGCATGGAGGCTGCTTACTTCTTACAGAAGCTTTGCCAATCAAGCTTTTTGACACTTCAAATGTTTATTGCTTGCCGTGGAATACCTGTGTTGG TCGGATTCCTGGAAGCTGATTATGCGAAGTACAGGGAAATGGTTCACCTAGCTATCGATGGCATGTGGCAGGTCTTTAAGCTTCAGAGGTCCACCCCAAG AAATGATTTCTGTCGCATAGCTGCAAAAAATGGAATTTTGTTGAGACTTATCAACACTCTTTATAGCTTGAATGAGGCAGCTAGGCTTGCCACTATATCT GTTGGAACTGGATTTTCATCAGATGGTCCAGCTCCCCGGCCACGCTCTGGCCAACTGGATTCTAGCCATCCTGTTTTCTTACAGAACGAGACATCATTTC CTGCAGCTGATCTGCCTGATGTCCTTAAGCTTAAGAACGGCATGATTGATCATCCATCATCAACTGATGCAATAGAGTCAGAAATCAGATACTCTAATAC TGATGTTGACAGGCCTCAATCAAGCAACTCAGCTTTGGCGACTGAAGCTGACAAAACTGGGAGTGCCGCTGTCAAAGATAGCTCAGCTTCTGTCACTAAG GAGCGAGATAACTTGGAACGGTGGAAAGCAGATGCTTCTAGAGCTGAAACAGACAACAGGCAGCAGCGAATTTCAGTTTCCAATAATAGAATTTCTGCCG ATAGGTCATCAAAATCATTAGAAAGTGTGTCAAATGGTATCTCTACTACAACACCTTCTCACCATGAGCAAGTTCGACCACTTCTAAGTTTGTTGGAAAA GGAACCTCCTTCTCGGTTGTCTGATCAGTTGGAGTATGTACGTCATCTCTCAGGATTAGAGAGACATGAAAGCATTCTGCCCCTACTTCATGCCTCTCAT GAGAAGAAGGCAAATGGCGAACTGGATTTTCTTATGGCAGGATTTGCAGAGGTCTCGGGGAGAGGAAAAGAAAATGGCACTCTCGAGTCTGCACCTCGGA TTTCACATAAAACAGTGAGTAAGAAAAGCAGCCCATTAGCCTCTAGTGATGGTGCTGCTTCCACGTCTGGTATTGCTTCCCAAACTGCGTCTGGTGTACT TTCCGGTTCTGGGGTGTTGAATGCCAGACCAGGGAGTGCAACATCATCTGGACTACTTTCCCACATGGTGTCAACAATGAACGCTGATGTTGCCAGGGGG TACCTTGAAAAGGTGGCTGACCTTCTACTTGAGTTTGCTCAAGCTGATACAACTGTCAAATCTTATATGTGCAGCCAAAGCTTACTTAGCCGTCTCTTCC AGATGTTCAACAAAATTGAACCCCCTATACTCCTAAAGATCCTAAAGTGCATCAATAATCTGTCTTGTGATCCTAACTGCTTGGAGAATCTTCAGCGGGC AGATGCAATTAAGTTCTTGATCCCAAATCTTGAACTGAAAGATGGACCTCTTGTTGGACAAATTCATGATGAGGTTCTTCATGCGCTCTTTAACCTGTGT AAGATAAACAAGAGGAGACAGGAACAAGCTGCTGAAAATGGAATCATTCCTCACCTCATGAATTTCATCATGCAAGGATCTCGCTTGAAACAATACGCAT TGCCTTTGCTATGCGACATGGCCCACGCATCTCGCAACTCCAGAGAACAACTGAGGGCTCATGGTGGATTGGATGTTTACTTGAGCCTTCTGGATGATGC ATCTTGGTCTGTGACTGCATTGGATTCCATCGCTGTTTGTTTGGCTCATGACAACGACAACCGCAAAGTAGAGCAAGCCTTGCTTAAAAAAGATGCAATT AACAAATTAGTCAAGTTTTTCCAGAGCTGTCCAGAGCAACAATTTGTTCATATCCTTGAGCCCTTCTTGAAAATCATCACGAAATCTTCACGGATAAATA CTACACTGGCTGTTACTGGTTTGACACCTTTGCTCATTGTGAGGTTGGACCATCAGGATGCAATAGCTCGTCTTAACTTGCTTAAACTAATCAAGGTAAT GTCTTTGTTTGTCTACTTCTTCAACAACTTAAGCCGATTCATCGGATGA
AA sequence Show only first row Show all	>Lus10010209 pacid=23154192 polypeptide=Lus10010209 locus=Lus10010209.g ID=Lus10010209.BGIv1.0 annot-version=v1.0 MLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVTVYIAQ VLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPA LFRIVQDDHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWILNSKRTLNSLRNTPSIRSIQEDVENGDNEIPDEDRSIEKAEAAITDSETGSKT ELSGEMTDEIKSDKNQSSENDEPDECIHSDQAPTLALHEKPQLHPDKASEHKIASGNSSHGPADMRDQDDVLMNGNLEFPDTRSKSVDKKHGGKGAALNE SKSFGFVSKSPDNGSQRAAKTSVTLGGNELSRFSDTPGDASLDDLFHPLDKAPADRTAEASTSTSTSHMNQGGTPVSDAGKHDLATKLRATIAQKQMEND VGKSSDGGDLFRVMMGVLKDDVIDFDGLVFDEKLPAENLFPLQVVEFGRLVGSLRPEESEDVISSACQKLVGMFHQRPEQKLVFITQHGLLPLMELLEVP KTRVICSVLQLINQIVKDNTDFQENACLVGLIPVVMSFAGPDRPREVRMEAAYFLQKLCQSREMVHLAIDGMWQVFKLQRSTPVKEIPVVMSFAGPDRPR EVRMEAAYFLQKLCQSSFLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILLRLINTLYSLNEAARLATIS VGTGFSSDGPAPRPRSGQLDSSHPVFLQNETSFPAADLPDVLKLKNGMIDHPSSTDAIESEIRYSNTDVDRPQSSNSALATEADKTGSAAVKDSSASVTK ERDNLERWKADASRAETDNRQQRISVSNNRISADRSSKSLESVSNGISTTTPSHHEQVRPLLSLLEKEPPSRLSDQLEYVRHLSGLERHESILPLLHASH EKKANGELDFLMAGFAEVSGRGKENGTLESAPRISHKTVSKKSSPLASSDGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTMNADVARG YLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNKIEPPILLKILKCINNLSCDPNCLENLQRADAIKFLIPNLELKDGPLVGQIHDEVLHALFNLC KINKRRQEQAAENGIIPHLMNFIMQGSRLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDASWSVTALDSIAVCLAHDNDNRKVEQALLKKDAI NKLVKFFQSCPEQQFVHILEPFLKIITKSSRINTTLAVTGLTPLLIVRLDHQDAIARLNLLKLIKVMSLFVYFFNNLSRFIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	0	1
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	2.2	0.9463
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	2.4	0.9430
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	3.2	0.9409
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	3.5	0.9418
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	4.2	0.9281
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	4.9	0.9278
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	5.5	0.9281
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	6.0	0.9449
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	7.4	0.9278
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	8.0	0.9218

Compare expression of checked genes

Lus10010209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.