Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50200 1490 / 0 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT5G22800 442 / 7e-140 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT3G16565 66 / 2e-11 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017408 [exp] 1823 / 0 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10022640 [exp] 471 / 4e-151 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10003337 [exp] 406 / 2e-125 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10000503 [exp] 42 / 0.0008 AT3G16565 269 / 2e-91 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094300 [exp] 1632 / 0 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2) Potri.009G141300 [exp] 466 / 1e-148 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.007G070250 [exp] 258 / 2e-79 AT1G50200 266 / 1e-82 Alanyl-tRNA synthetase (.1.2) Potri.010G024900 [exp] 51 / 2e-06 AT3G16565 338 / 2e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02272 [flax] [poplar] DHHA1 DHHA1 domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF01411 [flax] [poplar] tRNA-synt_2c tRNA synthetases class II (A)
Representative CDS sequence Show only first row Show all	>Lus10010210 pacid=23154223 polypeptide=Lus10010210 locus=Lus10010210.g ID=Lus10010210.BGIv1.0 annot-version=v1.0 ATGGCAGGTGATGAACCGATGCAGGTGCCTCAATGGTCAGCGGAGAAAGTGAGGGATACTTTCATCAAGTTTTACGAGTACAAGAATCACGTTAACTGGA AGTCCAGTCCAGTCGTCCCTGTGAATGATCCCACTCTCCTCTTCGCCAATGCTGGTATGAATCAGTACAAGCCCATCTTCTTGGGGACAGCTGATCCTAA TACTGCTCTGAGCAAGCTAACACGCGCATGCAATACCCAGAAGTGTATCCGCGCTGGAGGGAAGCATAATGATCTTGATGATGTGGGGAAGGACACGTAC CACCACACATTCTTTGAGATGTTAGGGAATTGGTCCTTCGGTGATTATTTCAAGACTGAGGCAATTGAGTGGGCTTGGGAGCTCCTGACTAAGGTTTATG GACTGCCGGCTGATCGTATTTATGCAACCTACTTTGGGGGAGACGAGAAAGCAGGTCTAGCTCCAGATACTGAAGCAAAAGACATATGGCTCAGGTTTTT GCCACCTGGGCGGGTGCTACCATTTGGTTGCAAGGACAATTTTTGGGAGATGGGTGACACCGGTCCTTGTGGTCCTTGTACCGAGATACATTATGATAGG GTTGGAAACCGTGATGCAGCTTCTTTGGTAAATAATGACGATCCTACGTGCATTGAGATATGGAACCTTGTGTTTATCCAGTTCAATAGGGAAAGTGATG GCTCCTTAAAACCGCTCCCGTCTAAGCATGTTGATACTGGAATGGGATTCGAGAGACTTACTTCAGTTTTACAAAACAAGATGAGCAATTACGACACTGA CGTCTTTATGCCCATTTTCAGTGCCATTCAACAGGCAACTGGGGTGCGTCCTTATACTGGAAAAGTTGGATCTGAGGACGTAGATGGAGTTGACATGGCT TACCGAGTTGTTGCTGATCACATTAGAACTCTCTCTTTTGCCATTGCTGACGGTTCTTGTCCAGGTAACGAGGGACGAGAATATGTTCTCAGGCGCATTC TCCGCCGTGCTGTTCGTTATGGAAGTGAGAAGCTAAATGCTCAAGAAGGGTTCTTTAATGGGCTAGTAAATGTTGTTGTACAAGTGATGGGTGATGTCTT CCCGGAGCTGAGAAAGAATGAACAACACATCAAGGAAATAATCACAGCAGAGGAAACCAGTTTCGGGAGAACTTTGCTTAAGGGCATTGAGAGATTCAAA AAGGCTGCCCAGGAGGATGCATTTGTTTTGTGGGACACGTATGGCTTCCCACTAGATTTGACCCAGCTGATGGCAGAAGAAAGAAAACTGGAAGTAGATG TTGAGGGCTTTAATAAAGCGATGGATGAAGCTAGGGAAAGATCAAGAAGTGCCCAAAATAAGAGTTTTTGGCAGCAAGCTGGTGGTGCTATTGTCATGGA TGCTGATGCGACATCTACATTACACAAGAAGGGTGTCTCTGCAACAAACGATTCTTCCAAATATATTTGGTTTGAGGATCATGAGACTTCAATTAAAGCT ATTTACACGGGTTCCGAGTTCTTGGAAAGTGCCAATCTTGGCAATGAAGTTGGCATAGTTCTGCAATCTACCAGCTTCTATGCTGAACAAGGTGGTCAGA TTTTCGACACTGGATTACTTGAAGGATCATTTGGTTCCTTCGAAGTTTGCAATGTGCAAATATTTGGAGGATTCATCCTTCATATTGGTTCGCTGACTGG AGGAACCGGAAAGTTTTCAGTTGGTGACAAGGTTGATTATGAAAGACGCAAGCTCATCGCACCTAACCATACTTGTACTCATATGCTGAACTTTGCTCTA AGAGAAGTCCTTGGTGATCACATTGACCAGAAGGGATCTATCGTCCTCCCTGAAAAATTAAGATTTGACTTCAATCATGGCAAGCCTGTGGACGCTGAAC TTTTGAGAAAAATTGAGACAATTGTTAACGACCAAATTAAGGCCGAGTTAGGTGTATATGCAAAGGAAGTGAGCCTGGATGAAGCCAAGCGAATTAATGG TCTTCGTGCTGTTTTCGGGGAAGTGTATCCTGATCCCGTTAGAGTGGTTGCAATTGGTCATAACGTCGAAGATCTTGTGGCTAACCCAAACAACGAAAAA TGGCTGTCACTTTCAGCAGAGCTTTGTGGAGGGACACATATAACAAACACCAAGGAAGCTAAAGCATTTGCACTTCTATCTGAAGAGGGAATTGCAAAAG GTATCAGACGAATAACTGCTGTTACAACTGATAGTGCATTTAAAGCGTTGGAATTGGCGCGCTCGCTTGAGCAAGAAGTTCGTGAAGCATCCAAAGAAGA TGGAAGTGCATTGGAAAAGAAAGTTGCCTCTCTGAAAAGCCGTGTGGATTCAGCAGCAATTCCTGCAGCCAAGAAAGCTGATCTCAGGGGGGAGATAACG AAGCTTCAGGCCCATGTGAGAAAGCAACAGAAGAAGATCGCTGAAGAGAATCTGCAGAAGGCCGTCCAGGTTGCAACAGAGATTGCTGAAACTGCTGCAT CAGAAGGGAAGGCATTCTGCATCACACGAGTCGATGTCGGTTTGGATGCGAGTGCAGTCCGCGAAGCTGCAATGAAAGTCCTCGAACGAAAGGGCATATC TATCATGGTCTTCAGTACCGATGAGACCACGAACAAAGCAGTGGTCTGTGCAGGAGTTCCCGAGAAGTCAGACCAGGGGAAGCAGCTGGAAGTGTCCGAG TGGTTGACTAATGCGCTGGGGCCTCTCAAAGGACGGTGCGGAAAAGGAAAAGGCGGTCTCGCCACTGGCCAGGGAACTGATGCATCCAAAGTAGAAGATG CCATGGAAGTGGCATCCAAGTTTGCAGACTTGAAGTTGAAATGA
AA sequence Show only first row Show all	>Lus10010210 pacid=23154223 polypeptide=Lus10010210 locus=Lus10010210.g ID=Lus10010210.BGIv1.0 annot-version=v1.0 MAGDEPMQVPQWSAEKVRDTFIKFYEYKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTY HHTFFEMLGNWSFGDYFKTEAIEWAWELLTKVYGLPADRIYATYFGGDEKAGLAPDTEAKDIWLRFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDR VGNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPSKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFSAIQQATGVRPYTGKVGSEDVDGVDMA YRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEKLNAQEGFFNGLVNVVVQVMGDVFPELRKNEQHIKEIITAEETSFGRTLLKGIERFK KAAQEDAFVLWDTYGFPLDLTQLMAEERKLEVDVEGFNKAMDEARERSRSAQNKSFWQQAGGAIVMDADATSTLHKKGVSATNDSSKYIWFEDHETSIKA IYTGSEFLESANLGNEVGIVLQSTSFYAEQGGQIFDTGLLEGSFGSFEVCNVQIFGGFILHIGSLTGGTGKFSVGDKVDYERRKLIAPNHTCTHMLNFAL REVLGDHIDQKGSIVLPEKLRFDFNHGKPVDAELLRKIETIVNDQIKAELGVYAKEVSLDEAKRINGLRAVFGEVYPDPVRVVAIGHNVEDLVANPNNEK WLSLSAELCGGTHITNTKEAKAFALLSEEGIAKGIRRITAVTTDSAFKALELARSLEQEVREASKEDGSALEKKVASLKSRVDSAAIPAAKKADLRGEIT KLQAHVRKQQKKIAEENLQKAVQVATEIAETAASEGKAFCITRVDVGLDASAVREAAMKVLERKGISIMVFSTDETTNKAVVCAGVPEKSDQGKQLEVSE WLTNALGPLKGRCGKGKGGLATGQGTDASKVEDAMEVASKFADLKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	0	1
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	1.0	0.8547
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	6.5	0.8267
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	8.1	0.8257
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	8.1	0.7696
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	14.9	0.8150
AT3G51500			unknown protein		Lus10017918 [exp]	19.3	0.8144
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	21.4	0.8243
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	22.9	0.7760
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	23.2	0.7939
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	23.6	0.8188

Compare expression of checked genes

Lus10010210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.