Plant FIBer expression Database

Lus10010211 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27470 745 / 0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
AT1G11870 256 / 1e-79 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017409
[exp]
890 / 0 AT5G27470 748 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Lus10010212
[exp]
501 / 1e-177 AT5G27470 474 / 4e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Lus10010344
[exp]
252 / 1e-78 AT1G11870 786 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Lus10036477
[exp]
245 / 5e-76 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G094400
[exp]
729 / 0 AT5G27470 731 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Potri.007G070501
[exp]
377 / 9e-131 AT5G27470 380 / 3e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Potri.002G100300
[exp]
259 / 5e-81 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
CL0298 tRNA_bind_arm PF02403 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain
Representative CDS sequence
>Lus10010211 pacid=23154240 polypeptide=Lus10010211 locus=Lus10010211.g ID=Lus10010211.BGIv1.0 annot-version=v1.0
ATGTTGGACATTAATCTGTTCAGGGAGGATAAGGGAAGCAATCCGGAAATCATCCGCGAATCTCAGCGTCGTCGTTCGGCCAATGTTGGGATTGTTGATG
AGATTATTAAGCTTGACAAGGAATGGAGGCAACGTCAATTCGAGTATGACAATCTGAGGAAGGATTTTAACAAGATCAACAAACAAGTTGCCAAACTCAG
GATCAGTGGTGGAGATGCAACTGAACTTATCCAGAGCACTGATGATAACAAGAAGCAAACTGCATTGAAAGAGATTGAGGTGCAGGAGGCTAAGTCATCT
TTGTATGCAAAGTTGCAAACAGTTGGTAACCTTGTCCATGATTCCGTCCCTATCAGCAAAGACGAGGCAAATAACGAAGTAATCAGAGTTTGGGGGGAGA
AACGCACTGACAAGAAACTCAAGAGTCATGTTGACCTTATTGAACTTCTTGGAATCGCTGATGTGAAGAAAGGGGCTGATGTAGCTGGAAGCAGAGGCTA
CTACCTAAAAGGTGACGGTGTACTACTCAATCAAGCGTTGATAAATTACGGACTTACTTTCTTAAGGAAAAGAGGGTTCACTCCCCTGCAGACTCCCTTT
TTCATGAGAAAGGATATCATGGGCCAGTGTGCTCAGTTGCAACAGTTTGACGACGAACTTTATAAGGTGACCGGAGAGGGGGATGATAAATATTTAATTG
CTACGGCTGAACAACCACTATGTGCGTATCACCTAGATGAGTGGATTCATCCCTCTGAACTACCGACCAGATATGCTGGATACTCAACCTGTTTCCGCAA
AGAAGCTGGTTCGCATGGTCGGGACACTTTAGGAATTTTCCGAGTTCATCAGTTTGAGAAACTGGAGCAGTTCTGCATTACAAGCCCAAATGACAATGCC
TCGTGGGTTATGCTTGAAGAAATGATGAAGAATTCTGAAGAATTTTACCAGACGCTGAACCTACCTTATCAAGTTATCTCCATCGTTTCGGGGGCCTTGA
ATGATGCTGCTGCAAAGAAGTATGATCTTGAGGCATGGTTTCCTGGTTCAAATGCCTACAGGGAGTTAGTCTCCTGTTCAAATTGCACCGATTACCAGTC
GAGAAGATTGGAAACCCGATATGGGCAGAAAAAGAGCAATGAGGCAGCAAAGCAATATGTTCACATGTTGAACTCGACCCTGACGGCTACGGAAAGGACA
ATGTGCTGCATACTCGAAAACTACCAGAGGGAAGATGGAGTTGAGATCCCAGAAGTTTTGAGACCATACATGGCTGATGTAACCTTCATGCCTTTCCTCG
CAGGAAAGGGAAAGAAAGCCAAGTAG
AA sequence
>Lus10010211 pacid=23154240 polypeptide=Lus10010211 locus=Lus10010211.g ID=Lus10010211.BGIv1.0 annot-version=v1.0
MLDINLFREDKGSNPEIIRESQRRRSANVGIVDEIIKLDKEWRQRQFEYDNLRKDFNKINKQVAKLRISGGDATELIQSTDDNKKQTALKEIEVQEAKSS
LYAKLQTVGNLVHDSVPISKDEANNEVIRVWGEKRTDKKLKSHVDLIELLGIADVKKGADVAGSRGYYLKGDGVLLNQALINYGLTFLRKRGFTPLQTPF
FMRKDIMGQCAQLQQFDDELYKVTGEGDDKYLIATAEQPLCAYHLDEWIHPSELPTRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKLEQFCITSPNDNA
SWVMLEEMMKNSEEFYQTLNLPYQVISIVSGALNDAAAKKYDLEAWFPGSNAYRELVSCSNCTDYQSRRLETRYGQKKSNEAAKQYVHMLNSTLTATERT
MCCILENYQREDGVEIPEVLRPYMADVTFMPFLAGKGKKAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27470 seryl-tRNA synthetase / serine... Lus10010211
[exp]
0 1
AT1G04190 TPR3 tetratricopeptide repeat 3, Te... Lus10021905
[exp]
1.4 0.9083
AT1G04190 TPR3 tetratricopeptide repeat 3, Te... Lus10041189
[exp]
2.0 0.8415
AT2G40660 Nucleic acid-binding, OB-fold-... Lus10034239
[exp]
2.4 0.8340
AT1G48050 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMO... Lus10009294
[exp]
2.8 0.8329
AT1G03150 Acyl-CoA N-acyltransferases (N... Lus10022048
[exp]
3.9 0.8220
AT1G51710 ATUBP6, UBP6 ubiquitin-specific protease 6 ... Lus10037610
[exp]
6.5 0.8008
AT1G53850 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALP... Lus10003936
[exp]
9.8 0.8124
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10027615
[exp]
9.9 0.7870
AT5G20920 EIF2 BETA, EMB1... embryo defective 1401, eukaryo... Lus10012186
[exp]
11.5 0.7720
AT1G57720 Translation elongation factor ... Lus10033213
[exp]
12.5 0.7516

Lus10010211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.