Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27470 473 / 6e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1) AT1G11870 179 / 8e-52 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017409 [exp] 501 / 9e-178 AT5G27470 748 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010211 [exp] 500 / 2e-177 AT5G27470 745 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010344 [exp] 181 / 2e-52 AT1G11870 786 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3) Lus10036477 [exp] 172 / 4e-49 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094400 [exp] 477 / 3e-168 AT5G27470 731 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.007G070501 [exp] 304 / 4e-103 AT5G27470 380 / 3e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.002G100300 [exp] 188 / 6e-55 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0298 [flax] [poplar] tRNA_bind_arm PF02403 [flax] [poplar] Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010212 pacid=23154176 polypeptide=Lus10010212 locus=Lus10010212.g ID=Lus10010212.BGIv1.0 annot-version=v1.0 ATGTTGGACATTAATCTGTCCAGGGAGGATAAAGGCAGCAATCCGGAAATCATCCGGGAATCGCTGCATCGCCGTTCGGCCAATGTTGAGATCGTCGATG AGATTATCAAGCTTGACAAGGAATGGAGGCAGAGTCAATTCGACGTTGACAATCTGAGGAAGGATTTCAATAAGATCAACAAACAAGTTGTCAAACTTAA GATCGCAGATAATGGAGTAATCAGAGGTTTCGGGAAGAAGCCTATGGAGAAGGAATTCAAAGTCAAAAGTCACGTTGACCTCGTTCAACTTCTTGGACTC GTTGATATGGAGAAAGGTATTCCAAGAATCACAGTTCTTGAGTATGTTTATCAACTTGCAACTCCTTTTGACATTTCTTCATCATATGTGCTTGTTCATC CTAGAGGTTACACACTCCTTCAGACTCCTTTTCTCATGAGGAAGGATACCATGGCCAATTGTGCTCAGTTGCCACAGTTTGATGAAGAACTTTATAAGGT GACTGGAGAGGGGGACGATAAATATTTAATTGCTACGGCTGAACAACCGCTGTCTACGTTTCACATGGATGATTGGATTCATCCCACTGAACTTCCGATC AGATATGCTGGATACTCAACGTGTTTCCGCAAAGAAGCTGGTTCGCATGGTCGGGACACTCTAGGCATCTTTCGAACTCACCAGTTTGAGAAACTGGAGC AATCCAAACAGCTGAAACTACCGTATCAAGTTGTCTCGGTTGTTTCGGGGGCTCTGAATGATGCTGCTGCAAAGAAGTACGATCTCGAAGCGTGGTTTCC TGGTTCAAATGCCTACAGGGAGTTGGTCTCCTGCTCGAATTGCACAGAGTACCAGTCGAGACGATTGGAAATCCGATACGGGCAGAAAAAGGGCAATGAG GCTGCAAAGCAATATGTTCACATGTTGAACTCTACACTGACTGCTACAGAAAGGACAATGTGCTGCATATTTGAGAACTACCAGAGGGAAGATGGAGTTG AGATCCCAGAAGTTCTGAGACCATACATGGGTGGTAAAATCCTTCATGTATTTCAAGGGAAGAAAACCAAGTTTCTCGAGGGGTTTTAA
AA sequence Show only first row Show all	>Lus10010212 pacid=23154176 polypeptide=Lus10010212 locus=Lus10010212.g ID=Lus10010212.BGIv1.0 annot-version=v1.0 MLDINLSREDKGSNPEIIRESLHRRSANVEIVDEIIKLDKEWRQSQFDVDNLRKDFNKINKQVVKLKIADNGVIRGFGKKPMEKEFKVKSHVDLVQLLGL VDMEKGIPRITVLEYVYQLATPFDISSSYVLVHPRGYTLLQTPFLMRKDTMANCAQLPQFDEELYKVTGEGDDKYLIATAEQPLSTFHMDDWIHPTELPI RYAGYSTCFRKEAGSHGRDTLGIFRTHQFEKLEQSKQLKLPYQVVSVVSGALNDAAAKKYDLEAWFPGSNAYRELVSCSNCTEYQSRRLEIRYGQKKGNE AAKQYVHMLNSTLTATERTMCCIFENYQREDGVEIPEVLRPYMGGKILHVFQGKKTKFLEGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010212 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003264 [exp]	1.4	0.7423
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034816 [exp]	2.4	0.7244
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	6.9	0.7156
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	6.9	0.7256
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	11.0	0.7005
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	13.0	0.6986
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021937 [exp]	14.1	0.6153
					Lus10014629 [exp]	15.0	0.6911
					Lus10032804 [exp]	16.5	0.6831
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10018574 [exp]	18.0	0.6386

Compare expression of checked genes

Lus10010212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.