Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18400 157 / 4e-47 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017411 [exp] 243 / 4e-78 AT3G19810 255 / 2e-81 Protein of unknown function (DUF177) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198900 [exp] 192 / 1e-60 AT5G18400 250 / 5e-83 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) Potri.002G062200 [exp] 172 / 1e-52 AT5G18400 234 / 7e-77 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0063 [flax] [poplar] PF05093 [flax] [poplar] CIAPIN1 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
Representative CDS sequence Show only first row Show all	>Lus10010213 pacid=23154206 polypeptide=Lus10010213 locus=Lus10010213.g ID=Lus10010213.BGIv1.0 annot-version=v1.0 ATGGAATCGAAGGTTGCGCTGGTGATTTCTGACGATCAGGTAGTGCGGATGAGCACGGTTAACGATGCGCTAAAGGAGCTTGGGAAAGAAGCTCTGCAGT GTGAAGTTCAGCTTTATACTCAGTCAACTTCATCAAGCAAACTACCAGTGGAGTCTTCTTCGTTGGATTTCCTCATTTGCATCAGTAGATCACATGAATA TCCTGGTGGGACTGGGTTTGATGAAATTTCTCGAGTGTTGAAGCCTGGTGGTACTATCTTTGTGTATAAGATTATGCAGGCCGTTCCTAATGAGGCAGAA AAGTCTCTTGAACGCCAATTACTTTTTGCTGGCTTCTTGGATGCTAAAGGTGAGCTGAGCTCGTCAACCAGTGGCCAGTCATTTCTGACGGTTAAGGCAA AGAAGGCTTCTTCAAAAATCGGGTCATCTTTCGCTCTCAAAAAGGTGACAAAAGCACCCGTGAAGCTCCAGATTGATGATGACTCAGATTTGATAGATGA AGATAGCCTTTTAACGGAAGAGGATTTGAAGAAACCTCAAATACCAGGCGAAGCCGAGGAAGAAGAGAAAGTTATGTTAGGATTGACCACCGAGCAACTG AGCAATCCTCAATCGTCCTGTGGAAGCTGTGGGCTTGGGGATGCCTTCCGTTGCGGTACATGTCCGTACAAGGGTCTTCCGCCATTCAAACTCGGGGAAA AGGTATCGTTGTCCGAGAACTTCCTCGTATCAGACTTCTAA
AA sequence Show only first row Show all	>Lus10010213 pacid=23154206 polypeptide=Lus10010213 locus=Lus10010213.g ID=Lus10010213.BGIv1.0 annot-version=v1.0 MESKVALVISDDQVVRMSTVNDALKELGKEALQCEVQLYTQSTSSSKLPVESSSLDFLICISRSHEYPGGTGFDEISRVLKPGGTIFVYKIMQAVPNEAE KSLERQLLFAGFLDAKGELSSSTSGQSFLTVKAKKASSKIGSSFALKKVTKAPVKLQIDDDSDLIDEDSLLTEEDLKKPQIPGEAEEEEKVMLGLTTEQL SNPQSSCGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSENFLVSDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	3.5	0.8143
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	3.7	0.8335
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	10.9	0.8032
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	11.6	0.8068
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	12.2	0.8097
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	12.7	0.8042
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	14.3	0.7852
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	14.4	0.7983
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	17.4	0.8118
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	18.4	0.7953

Compare expression of checked genes

Lus10010213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.