Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19810 278 / 2e-93 Protein of unknown function (DUF177) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017411 [exp] 375 / 5e-130 AT3G19810 255 / 2e-81 Protein of unknown function (DUF177) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170100 [exp] 289 / 5e-98 AT3G19810 285 / 2e-95 Protein of unknown function (DUF177) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02620 [flax] [poplar] YceD Large ribosomal RNA subunit accumulation protein YceD
Representative CDS sequence Show only first row Show all	>Lus10010214 pacid=23154191 polypeptide=Lus10010214 locus=Lus10010214.g ID=Lus10010214.BGIv1.0 annot-version=v1.0 ATGGTTAGCAGAGGCCAGCATACTGTCACGGATGTATCTTTGAATTGGGACGACGATGATTCGGAGGAACTTGACATTGATGACGGGGAGTCGCCTTGGG AAGGTGCTATTATTTACCGGAGGAATGCACACGTTCCGCACGTTGAGTACTGCACGACACTGGAAAGACTCGGTCTAGGTCACCTCTCGACAGATGTTTC GAGATCAAGGGCTTCAATGATGGGACTAAGGGTTACTAAAGCTGTTAAAGATTTCCCACAGGGAACTCCTGTTCAGATCTCGGTTGATGTTACAAAGAAG AAGAATAGGCTGAGGCTTGATGGGATTATCAGGACAGTGCTCACCTTAACCTGCAATAGGTGTTGTCAGCCAGCAGCTGAGAGTATCTACTCAAACTTCT CTCTTCTACTAACAGAAGACCCCGTCGAAGAGCCAGAGGTGATTAGTTTAGATCCGAACCCTGCCGGAGCTGGCGAGCAAGACAACGAGGATGCGCTGAT CGATTGGGACGACAGGCTGTATTTTCCTCCTGAAGAGAGTGAGGTCGACATATCCAAGAACATAAGAGATATGGTGCATGTGGAGATCACAATCAATGCG ATATGCGGTCCAATGTGTAAAGGGGTGTGCATCAAGTGTGGCACAGACTTGAACACGGGCAGATGTAAGTGCAGCAATGCAGAGAGTAGCTCTAGCAAAG CCTCTGGGCCTCTTGGAAATTTGAGAGAAAAAATGCAATCTAAATAG
AA sequence Show only first row Show all	>Lus10010214 pacid=23154191 polypeptide=Lus10010214 locus=Lus10010214.g ID=Lus10010214.BGIv1.0 annot-version=v1.0 MVSRGQHTVTDVSLNWDDDDSEELDIDDGESPWEGAIIYRRNAHVPHVEYCTTLERLGLGHLSTDVSRSRASMMGLRVTKAVKDFPQGTPVQISVDVTKK KNRLRLDGIIRTVLTLTCNRCCQPAAESIYSNFSLLLTEDPVEEPEVISLDPNPAGAGEQDNEDALIDWDDRLYFPPEESEVDISKNIRDMVHVEITINA ICGPMCKGVCIKCGTDLNTGRCKCSNAESSSSKASGPLGNLREKMQSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	0	1
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	1.7	0.9523
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	2.0	0.9629
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	2.8	0.9608
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	5.3	0.9503
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	5.5	0.9495
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	6.0	0.9438
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	6.7	0.9390
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	7.7	0.9286
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	9.5	0.9422
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	11.4	0.9295

Compare expression of checked genes

Lus10010214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.