Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19820 711 / 0 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) AT5G56970 42 / 0.0008 ATCKX3, CKX3 cytokinin oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017412 [exp] 688 / 0 AT3G19820 583 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10017413 [exp] 176 / 4e-53 AT3G19820 216 / 2e-68 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170000 [exp] 751 / 0 AT3G19820 992 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Potri.008G084800 [exp] 748 / 0 AT3G19820 993 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010215 pacid=23154229 polypeptide=Lus10010215 locus=Lus10010215.g ID=Lus10010215.BGIv1.0 annot-version=v1.0 ATGTCAGATCTAGAGGTTCCTTTGGCTCAGCGCCCCAAGAGGAAGAAGATTTGGGTGGACTACTTCGTTAACTTCAGATGGATTATAGTCATCTTTGTTG TCCTCCCAATCTCCTTCACCCTCTACTTCCTCACCTATCTTGGCGACGTGTGGTCCGAGATGAAGTCGTTTAAGAAGCGTCAAAAGGAACACGATGACAA TGTCAAGAAAGTCGTCAAACGACTCAAGGAAAGAAATGCATCAAAGGACGGTCTTGTGGGCGTACTCATCAACGGTTATGGAATCGAGGGAAGCTCTCAC ATCTATGGCCTTTTTTCGGACACTGTTGTGGCATATGAGATTGTTTTGGCTGACGGTCAAGTAGTCAGAGCTACCAAGGACAACGAGTACTCTGATCTTT TCTATGCTATCCCTTGGTCTCAAGGAACACTTGGGCTTCTCGTATCTGCTGAGATCAAGCTTATAGACATTAAAGAGTACATGAAAGTGACCTACCAGCC AGTCAAGGGCTCTCTTAAAGATCTGGCACAGGCTTATTCGGACTCTTTCGCCCCAAGAGATGGAGATCAGGATAACCCCGAAAAGGTTCCGGATTTCGTG GAGGGTATGATCTATAATCCTCATGAAGGTGTTATGATGACTGGAAGGTACGCGTCCAAAGAAGAGGCCAAGAAAAAGGGGAACAAAATCAACAGCGTTG GTTGGTGGTACAAGACATGGTTCTACCAACATGCGCAGACTGCCTTGAAGAGAGGAGAGTTCGTGGAGTACATCCCGACTAGGGAGTATTACCACAGGCA TACAAGATGTCTGTACTGGGAAGGGAAGCTCATTCTCCCATTTGCTGATCAGTTCTGGTTCAGGTTTCTCTTAGGCTGGCTGATGCCTCCTAAGGTTTCT CTACTCAAGGCCACACAAGGAGAAGCAATCAGGAACTACTACCATGAGATGCATGTTATCCAGGATATGCTTGTTCCTCTGTACAAGGTCGGCGACGCTC TGGAATGGGTCCATCGTGAGATGGAGGTATACCCTATCTGGATCTGCCCTCACAAGCTGTCCAGGCTGCCAGTGAAAGCCATGATCTACCCCGAGCCAGG ATTCGAGCTCCACCGCAGGCAAGGGGACACCTCGTACGCCCAGATGTACACCGACGTCGGAGTGTACTATGCCCCAGGACCCGTGCTGAGAGGTGAGGAG TTCGACGGAGCAGAGGCAGTACGCCGTCTCGAGCAGTGGCTGATAGAGAACCACGGGTTCCAGCCTCAGTACGCGGTGTCAGAGCTGAACGAGAAGGACT TCTGGAGGATGTTCGATGCCGGGCTGTACGAGGAGGCCAGGAAGAAGTACAAGGCTGTGGGCACCTTCATGAGTGTGTACTACAAGTGTAAGAAAGGGAG GAAGACTGAGAAGGAAGTGCAGGAAGCTGAGCAAGCTCAGCTGGACACTCCTTACGCCGAGCTCGCTTGA
AA sequence Show only first row Show all	>Lus10010215 pacid=23154229 polypeptide=Lus10010215 locus=Lus10010215.g ID=Lus10010215.BGIv1.0 annot-version=v1.0 MSDLEVPLAQRPKRKKIWVDYFVNFRWIIVIFVVLPISFTLYFLTYLGDVWSEMKSFKKRQKEHDDNVKKVVKRLKERNASKDGLVGVLINGYGIEGSSH IYGLFSDTVVAYEIVLADGQVVRATKDNEYSDLFYAIPWSQGTLGLLVSAEIKLIDIKEYMKVTYQPVKGSLKDLAQAYSDSFAPRDGDQDNPEKVPDFV EGMIYNPHEGVMMTGRYASKEEAKKKGNKINSVGWWYKTWFYQHAQTALKRGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQFWFRFLLGWLMPPKVS LLKATQGEAIRNYYHEMHVIQDMLVPLYKVGDALEWVHREMEVYPIWICPHKLSRLPVKAMIYPEPGFELHRRQGDTSYAQMYTDVGVYYAPGPVLRGEE FDGAEAVRRLEQWLIENHGFQPQYAVSELNEKDFWRMFDAGLYEEARKKYKAVGTFMSVYYKCKKGRKTEKEVQEAEQAQLDTPYAELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	0	1
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	1.4	0.9450
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	3.2	0.9070
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	10.6	0.8575
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	13.0	0.8750
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	14.1	0.8612
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	15.4	0.8721
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	17.2	0.8796
AT5G47720			Thiolase family protein (.1.2....		Lus10006362 [exp]	17.3	0.8257
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	17.4	0.8666
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	20.5	0.8512

Compare expression of checked genes

Lus10010215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.