Plant FIBer expression Database

Lus10010216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56230 133 / 2e-38 BTB/POZ domain-containing protein (.1)
AT1G01640 52 / 2e-08 BTB/POZ domain-containing protein (.1.2)
AT2G40440 39 / 0.0006 BTB/POZ domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017414
[exp]
78 / 1e-17 AT3G56230 102 / 3e-26 BTB/POZ domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G083800
[exp]
150 / 3e-45 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10010216 pacid=23154246 polypeptide=Lus10010216 locus=Lus10010216.g ID=Lus10010216.BGIv1.0 annot-version=v1.0
ATGGATTGCTCGATTTGCACGACGATGCCCTTCATTCTCCGGCCGCCGAGGAACACCATATGCTCCGGCTGTTATGAGGCTGCTAGAACCGCCGTCTCCC
TCATCAACCAATTCGAAACCGGCGACAAGGGAGACGATCATGATCATCCACCTCAACCTCATAAAACCCATTCTTCTAAGCCTCAACCACTGGCAAACTT
ACCAAGATGGGTCAACAGCATGAAAGACAAAGAAGACGAATCAACCCAAAAAATCGATTTCCTCAGCAATCTCGTCGGCCTGTTCCGATCACAACTTCTC
ACCGACATCCACCTTAAATCCGGCGACGACTCTCCGTCCATCCCCGCTCACAAAGCCCTCCTTGTAAGCGCCGTTTGTTTCAACGGCGGGGCGTTGACGT
TGAGAGAGGCGGCGTTGAGTTGCGTGGTGAAGAAGATGGATGAGGTGGCGTATTCGGGGAAGTACGAGGCGTTCGTGGCCAGGAGCCCCGGTTTGGCTGT
GGAGGTCACGAGGGCTTTTCTGGAAAATGCCAAAGACTCGCTGCTGCAGAGCAAACAATTGTAA
AA sequence
>Lus10010216 pacid=23154246 polypeptide=Lus10010216 locus=Lus10010216.g ID=Lus10010216.BGIv1.0 annot-version=v1.0
MDCSICTTMPFILRPPRNTICSGCYEAARTAVSLINQFETGDKGDDHDHPPQPHKTHSSKPQPLANLPRWVNSMKDKEDESTQKIDFLSNLVGLFRSQLL
TDIHLKSGDDSPSIPAHKALLVSAVCFNGGALTLREAALSCVVKKMDEVAYSGKYEAFVARSPGLAVEVTRAFLENAKDSLLQSKQL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56230 BTB/POZ domain-containing prot... Lus10010216
[exp]
0 1
AT2G21100 Disease resistance-responsive ... Lus10034478
[exp]
1.0 0.9592
AT3G18180 Glycosyltransferase family 61 ... Lus10036003
[exp]
2.8 0.9540
Lus10002087
[exp]
3.0 0.9532
AT4G34770 SAUR-like auxin-responsive pro... Lus10007562
[exp]
4.2 0.9433
AT4G12010 Disease resistance protein (TI... Lus10004075
[exp]
4.8 0.9248
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Lus10031859
[exp]
4.9 0.9386
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Lus10029838
[exp]
5.1 0.9313
AT2G28670 ESB1 ENHANCED SUBERIN 1, Disease re... Lus10029585
[exp]
5.3 0.9525
AT5G05340 Peroxidase superfamily protein... Lus10008581
[exp]
5.6 0.9197
AT4G06536 SPla/RYanodine receptor (SPRY)... Lus10010045
[exp]
6.7 0.9458

Lus10010216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.