Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 152 / 1e-47 unknown protein AT3G56220 138 / 4e-42 bHLH transcription regulators (.1) AT1G29270 55 / 5e-10 unknown protein AT1G12860 48 / 6e-07 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65640 45 / 1e-05 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 44 / 2e-05 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017415 [exp] 250 / 4e-86 AT2G40435 146 / 3e-45 unknown protein Lus10025257 [exp] 141 / 8e-43 AT2G40435 134 / 2e-40 unknown protein Lus10009089 [exp] 133 / 1e-39 AT2G40435 129 / 2e-38 unknown protein Lus10029251 [exp] 75 / 2e-17 AT2G40435 91 / 5e-24 unknown protein Lus10007304 [exp] 68 / 1e-14 AT1G29270 97 / 4e-26 unknown protein Lus10032542 [exp] 45 / 1e-05 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 45 / 1e-05 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10002160 [exp] 44 / 1e-05 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10039631 [exp] 44 / 2e-05 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106900 [exp] 145 / 2e-45 AT2G40435 150 / 4e-47 unknown protein Potri.016G132600 [exp] 142 / 6e-44 AT2G40435 155 / 2e-49 unknown protein Potri.013G154100 [exp] 126 / 2e-37 AT2G40435 126 / 9e-38 unknown protein Potri.019G126800 [exp] 118 / 2e-34 AT2G40435 144 / 1e-44 unknown protein Potri.011G070000 [exp] 65 / 1e-13 AT1G29270 75 / 2e-17 unknown protein Potri.004G060800 [exp] 64 / 5e-13 AT1G29270 69 / 4e-15 unknown protein Potri.012G106000 [exp] 48 / 8e-07 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G108400 [exp] 45 / 5e-06 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.015G105200 [exp] 45 / 7e-06 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010217 pacid=23154217 polypeptide=Lus10010217 locus=Lus10010217.g ID=Lus10010217.BGIv1.0 annot-version=v1.0 ATGGTAGTGTCTAAGGAGAGCAGGATAATGCATGAGAAGCTGCAACTCCTTGGTTCCATTACTAAATCTCATTCTGTGGACGGGAGCTCAATCATAGTGG ATGCATCCAACTACATTCAACAGCTGAAGCAGAAGATAGTGAAACTCAATCATCAGTTAGATTTCCCAGATGATGATGATGATGATGATCAACCTTCTTC ATCAACATCCCATCATCAACATAATGGGACCCCGGTGGTGACAGTGGAAACCCTAGAGAAAGGTTTCTTAATAAATGTAGCATCAGAGAAGAACTGCCCT GGCCTGCTTGTATCCGTGTTAGAGGCATTCGAAGAGATCGGGCTTAACGTGGTCGAAGCCAGGGTTTCTTGTACCGACAGTTTTCGCCTCCAAGCAGTTG GCGGTGGACAGATTCATGATCAGAATGAAGAAAGGGAGCAAAGGAGTATTGATGCAAAGATGGTAAAACGAGCAGTGTTGCAGGCGATTCATGGATGGGA ATGA
AA sequence Show only first row Show all	>Lus10010217 pacid=23154217 polypeptide=Lus10010217 locus=Lus10010217.g ID=Lus10010217.BGIv1.0 annot-version=v1.0 MVVSKESRIMHEKLQLLGSITKSHSVDGSSIIVDASNYIQQLKQKIVKLNHQLDFPDDDDDDDQPSSSTSHHQHNGTPVVTVETLEKGFLINVASEKNCP GLLVSVLEAFEEIGLNVVEARVSCTDSFRLQAVGGGQIHDQNEEREQRSIDAKMVKRAVLQAIHGWE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40435			unknown protein		Lus10010217 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	2.0	0.8669
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	7.4	0.8154
AT4G04190			unknown protein		Lus10006268 [exp]	7.5	0.7447
AT2G33580			Protein kinase superfamily pro...		Lus10036731 [exp]	10.6	0.7087
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	12.2	0.8395
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	13.0	0.8369
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	13.7	0.7661
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	13.8	0.8025
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	16.6	0.7509
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032281 [exp]	19.1	0.7359

Compare expression of checked genes

Lus10010217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.