Plant FIBer expression Database

Lus10010218 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56210 144 / 8e-44 ARM repeat superfamily protein (.1.2.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017416
[exp]
216 / 2e-71 AT3G56210 223 / 6e-74 ARM repeat superfamily protein (.1.2.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G075600
[exp]
162 / 1e-50 AT3G56210 198 / 5e-65 ARM repeat superfamily protein (.1.2.4.5)
PFAM info
Representative CDS sequence
>Lus10010218 pacid=23154193 polypeptide=Lus10010218 locus=Lus10010218.g ID=Lus10010218.BGIv1.0 annot-version=v1.0
ATGCGCACATTAGCAGCTCAACTCAGAACGGTAATCACTTCCGGCGAAAAGCCGTCTCTCCGATATTCAATTCCCGCTTTCCGTTTCTCTGAATCTCGGT
CCTTTTTATTCAATCTCTTCACAGTCTTGTTCGCAGTATCTGCGCTGGATCCCCGCCGGAAATGCGCCGCGGCGGCACCGCAATTTCTCATCATCGTCGG
AGATAATTTGGTACATCAGTCGATTTCGCTTCTGCAAGTGAAAGATCCTTACTTCAAAAGAACTGGAGCTTCTAGACTAACTCGGTTTGCTGTCGATGAT
GAAAGGAGGATGAAAGTGGTGGAACTAGGAGGTGCTCAAGAGCTGGTTAACATGTTGCAGGCTGCTCAAGATGACCGGACCAGGAAATCCGCCCTTGAAG
CTCTTGCTGCCTTGTCAAACTCAGATAAAGCAGTTGGAGCTTTATGGGAGTTCGGAGCAATTTCAGTAGTACAGTCTACTCCAAGTTCTGCGGAGGAAGC
TGACATTGACAAGTACAAAATAAGCATACTGAAAAGGTTTCAAGATTTGAGACACGATGAATCCTCGTAG
AA sequence
>Lus10010218 pacid=23154193 polypeptide=Lus10010218 locus=Lus10010218.g ID=Lus10010218.BGIv1.0 annot-version=v1.0
MRTLAAQLRTVITSGEKPSLRYSIPAFRFSESRSFLFNLFTVLFAVSALDPRRKCAAAAPQFLIIVGDNLVHQSISLLQVKDPYFKRTGASRLTRFAVDD
ERRMKVVELGGAQELVNMLQAAQDDRTRKSALEALAALSNSDKAVGALWEFGAISVVQSTPSSAEEADIDKYKISILKRFQDLRHDESS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56210 ARM repeat superfamily protein... Lus10010218
[exp]
0 1
AT1G43860 sequence-specific DNA binding ... Lus10029749
[exp]
3.9 0.8978
AT2G16860 GCIP-interacting family protei... Lus10027464
[exp]
5.8 0.8968
AT4G17510 UCH3 ubiquitin C-terminal hydrolase... Lus10026940
[exp]
7.4 0.8886
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Lus10030343
[exp]
8.5 0.8905
AT1G11780 oxidoreductase, 2OG-Fe(II) oxy... Lus10015782
[exp]
9.5 0.8877
AT5G27400 S-adenosyl-L-methionine-depend... Lus10015166
[exp]
10.8 0.8934
AT1G09150 pseudouridine synthase and arc... Lus10015197
[exp]
15.1 0.8802
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
15.6 0.8838
AT1G20770 unknown protein Lus10013217
[exp]
17.2 0.8820
AT4G22000 unknown protein Lus10008487
[exp]
18.1 0.8857

Lus10010218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.