Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10980 577 / 0 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT5G05350 528 / 0 PLAC8 family protein (.1) AT1G11380 45 / 5e-05 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017417 [exp] 939 / 0 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 509 / 2e-176 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10001260 [exp] 504 / 1e-174 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10002586 [exp] 57 / 5e-09 AT1G11380 273 / 1e-92 PLAC8 family protein (.1) Lus10018410 [exp] 57 / 8e-09 AT1G11380 270 / 1e-91 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182100 [exp] 644 / 0 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.008G075300 [exp] 565 / 0 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.016G129700 [exp] 538 / 0 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.004G026700 [exp] 51 / 8e-07 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.011G040100 [exp] 47 / 1e-05 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.006G024900 [exp] 42 / 0.0002 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11204 [flax] [poplar] DUF2985 Protein of unknown function (DUF2985) PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10010219 pacid=23154183 polypeptide=Lus10010219 locus=Lus10010219.g ID=Lus10010219.BGIv1.0 annot-version=v1.0 ATGGTTGCAAGTGGAAATGGGGATACTACCGCAAAAGATGAAACCTTGGAACAACCCAAAACCACAGATGGACAAGTCTCTATTCAGATCTCAGCTTCCA ACAAGACCTTACTAGGCAACGAGAACCCTTCCACCAAGACGTCGTCGCAAGATAACAGCTTGCCTAGCGTAACTAACCGTGCTGCCTTCCTTAAGTTTGG CTCTGCATCTGCCAAGTTCAGGAAGCTAGCTAGGGATAAAGATGACGCCTCGCGCTTGGTAGCTTCTTCGAGTAGTCGTGGGTTTAGAGAAAGGATTCAT GGTGTTTTAGCTAAGAAGATCGATTGGGGTATGGTGTTGAAGATGAGCAAAGAGTGGATCAGGGACCCGATGAACTTGGCACTTTTCGTGTGGATACTGT GTGTTGCCATATCAGGTGCGATCTTGTTTCTTGTCATGACTGGGATGTTGAACCAGGTTTTGCCACACAAGTCTCAGAGAAACACATGGTTTGAAGTCAA TAACCAAATACTCAATGCATTGTTCACTCTGATGTGTTTGTATCAACATCCGAAGCGGGAATTACTTAAATGTGGGAAGGTTTCTATTACTAAGCTGAGG AAAGTTTACTGCAAGAATGGGACTTACAAGCCCCATGAATGGGCACATATGATGGTTGTTGTGTTGCTACTTCATTTGAATTGTTTTGCACAGTATGCTT TATGCGGTTTGAATATCGGTTACAGGAGATCCGAACGGCCTCCTTTAGGGGTCGGATTGTGCATATCTCTTGCTATAGGTGCACCTGCAGCTGCTGGAGT GTATTCAATACTCAGTCCACTTGGAAAGGACTATGATTTAGGCATTGATGAAGAAGCAGGACATGATGAGGGTTCAGTCAATGGCCGTCAGTTGTTGGCT GGTAGATCATTGGAAAAGAGGTACTCATTCGCAATGGGAGATAATAATGTTGAAGGGATGCTACAGAGTAGGCCACAATGGAGTGGTGGGATACTCGATT TCTGGGATGACATTTCGTTGGCGTATTTGTCACTCTTCTGCAGCTTCTGTGTGTTTGGTTGGAACATGGAGAGGCTAGGAATGGGGAACATGTATGTACA CATCGCGACATTCTTGCTCTTCTGTATGGCTCCATTCTGGATATTCAACTTAGCTGCAGTCAACATCGATAACGAAATGGTCAGGGAAGCACTAGGAGTT GCTGGATTAGTTCTCTGCCTGTTCGGTTTACTCTATGGTGGGTTCTGGAGGATTCAGATTAGAAAGAGATTCAATTTGCCAGCTTACACCTTCTGTTTCG GTAAGCCAGGAGCTTCTGATTGCATACTGTGGCTGTGTTGCTGCTGGTGTTCGCTAGCTCAGGAGGTCCGGACTGGGAATGGTTACGATATCGTGGAGAA CAAGCTGCTGGAGAAAGGCTCGTCGTCTCAAAGTACAAAACCGGCTGACTCGAGCCATAATAAGCGACTTGATGTGGTCGGGGAGGGTGAAGCCATGACT GCACCAAGTCCATCAGTGATAGAGAGAGATGGTGGTGGCAATGGCGGCATCATGGAGGAGAAGGGAAAATAG
AA sequence Show only first row Show all	>Lus10010219 pacid=23154183 polypeptide=Lus10010219 locus=Lus10010219.g ID=Lus10010219.BGIv1.0 annot-version=v1.0 MVASGNGDTTAKDETLEQPKTTDGQVSIQISASNKTLLGNENPSTKTSSQDNSLPSVTNRAAFLKFGSASAKFRKLARDKDDASRLVASSSSRGFRERIH GVLAKKIDWGMVLKMSKEWIRDPMNLALFVWILCVAISGAILFLVMTGMLNQVLPHKSQRNTWFEVNNQILNALFTLMCLYQHPKRELLKCGKVSITKLR KVYCKNGTYKPHEWAHMMVVVLLLHLNCFAQYALCGLNIGYRRSERPPLGVGLCISLAIGAPAAAGVYSILSPLGKDYDLGIDEEAGHDEGSVNGRQLLA GRSLEKRYSFAMGDNNVEGMLQSRPQWSGGILDFWDDISLAYLSLFCSFCVFGWNMERLGMGNMYVHIATFLLFCMAPFWIFNLAAVNIDNEMVREALGV AGLVLCLFGLLYGGFWRIQIRKRFNLPAYTFCFGKPGASDCILWLCCCWCSLAQEVRTGNGYDIVENKLLEKGSSSQSTKPADSSHNKRLDVVGEGEAMT APSPSVIERDGGGNGGIMEEKGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	1.0	0.8301
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	3.0	0.7473
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	3.9	0.7352
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	7.1	0.7780
					Lus10029619 [exp]	15.6	0.7186
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	15.7	0.7196
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	16.7	0.7357
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	25.7	0.6904
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	27.0	0.6925
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	27.7	0.7198

Compare expression of checked genes

Lus10010219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.